Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF517 and GFF518 are separated by 67 nucleotides GFF518 and GFF519 are separated by 279 nucleotides
GFF517 - Lipid A export ATP-binding/permease protein MsbA, at 184,009 to 185,856
GFF517
GFF518 - Transcriptional regulator, at 185,924 to 186,841
GFF518
GFF519 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 187,121 to 188,020
GFF519
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 184.969 kb on + strand, within GFF517 at 184.969 kb on + strand, within GFF517 at 185.146 kb on + strand, within GFF517 at 185.260 kb on + strand, within GFF517 at 185.261 kb on - strand, within GFF517 at 185.262 kb on - strand, within GFF517 at 185.269 kb on + strand, within GFF517 at 185.269 kb on + strand, within GFF517 at 185.269 kb on + strand, within GFF517 at 185.269 kb on + strand, within GFF517 at 185.270 kb on - strand, within GFF517 at 185.270 kb on - strand, within GFF517 at 185.270 kb on - strand, within GFF517 at 185.407 kb on + strand, within GFF517 at 185.408 kb on - strand, within GFF517 at 185.419 kb on + strand, within GFF517 at 185.510 kb on - strand, within GFF517 at 185.510 kb on - strand, within GFF517 at 185.567 kb on + strand, within GFF517 at 185.815 kb on + strand at 185.815 kb on + strand at 185.815 kb on + strand at 185.815 kb on + strand at 185.815 kb on + strand at 185.816 kb on - strand at 185.912 kb on + strand at 186.443 kb on + strand, within GFF518 at 186.443 kb on + strand, within GFF518 at 186.443 kb on + strand, within GFF518 at 186.444 kb on - strand, within GFF518 at 186.444 kb on - strand, within GFF518 at 186.522 kb on - strand, within GFF518 at 186.536 kb on + strand, within GFF518 at 186.755 kb on + strand at 186.855 kb on + strand at 186.862 kb on + strand at 186.863 kb on - strand at 186.901 kb on + strand at 186.964 kb on + strand at 187.073 kb on + strand at 187.260 kb on - strand, within GFF519 at 187.260 kb on - strand, within GFF519 at 187.281 kb on - strand, within GFF519 at 187.364 kb on + strand, within GFF519 at 187.364 kb on + strand, within GFF519 at 187.487 kb on + strand, within GFF519 at 187.488 kb on - strand, within GFF519 at 187.643 kb on + strand, within GFF519 at 187.761 kb on - strand, within GFF519
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 184,969 + GFF517 0.52 -0.9 184,969 + GFF517 0.52 -0.9 185,146 + GFF517 0.62 +0.4 185,260 + GFF517 0.68 +1.3 185,261 - GFF517 0.68 -0.2 185,262 - GFF517 0.68 -0.5 185,269 + GFF517 0.68 +0.1 185,269 + GFF517 0.68 +1.1 185,269 + GFF517 0.68 -0.3 185,269 + GFF517 0.68 +0.2 185,270 - GFF517 0.68 +0.5 185,270 - GFF517 0.68 +0.7 185,270 - GFF517 0.68 -0.1 185,407 + GFF517 0.76 -0.2 185,408 - GFF517 0.76 -0.3 185,419 + GFF517 0.76 -0.2 185,510 - GFF517 0.81 -0.7 185,510 - GFF517 0.81 +0.6 185,567 + GFF517 0.84 +0.2 185,815 + +2.0 185,815 + -3.3 185,815 + -0.3 185,815 + +1.0 185,815 + -0.4 185,816 - -0.1 185,912 + -0.2 186,443 + GFF518 0.57 -0.3 186,443 + GFF518 0.57 -1.1 186,443 + GFF518 0.57 -0.2 186,444 - GFF518 0.57 +0.2 186,444 - GFF518 0.57 -1.1 186,522 - GFF518 0.65 -2.9 186,536 + GFF518 0.67 -0.1 186,755 + -0.9 186,855 + -0.2 186,862 + -0.1 186,863 - +0.1 186,901 + +0.9 186,964 + -0.2 187,073 + +0.4 187,260 - GFF519 0.15 +1.2 187,260 - GFF519 0.15 +0.5 187,281 - GFF519 0.18 +0.3 187,364 + GFF519 0.27 -0.4 187,364 + GFF519 0.27 -0.5 187,487 + GFF519 0.41 +1.1 187,488 - GFF519 0.41 +0.7 187,643 + GFF519 0.58 +1.0 187,761 - GFF519 0.71 +1.1
Or see this region's nucleotide sequence