Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5043

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,054,408	+		GFF5041	0.60	-2.2
2,054,634	-		GFF5041	0.77	-0.2
2,054,922	+				+0.0
2,055,310	-		GFF5042	0.82	+0.0
2,055,539	-		GFF5043	0.12	-0.3
2,055,539	-		GFF5043	0.12	-0.3
2,056,009	+		GFF5043	0.49	-0.3
2,056,009	+		GFF5043	0.49	-0.9
2,056,112	-		GFF5043	0.57	-0.7
2,056,130	-		GFF5043	0.58	-0.2
2,056,664	-				-1.4
2,056,763	+				-0.5
2,056,763	+				-1.0
2,056,764	-				-0.7
2,057,148	-		GFF5044	0.49	+0.3
2,057,174	+		GFF5044	0.52	-0.7
2,057,277	-		GFF5044	0.63	-0.9
2,057,277	-		GFF5044	0.63	+1.6
2,057,384	+		GFF5044	0.74	-0.3
2,057,384	+		GFF5044	0.74	+0.9
2,057,534	+				+0.8
2,057,643	-				+0.4
2,057,643	-				+1.1
2,057,643	-				+0.0
2,057,643	-				+0.7
2,057,644	+				+0.2
2,057,645	-				-0.0
2,057,645	-				+0.1
2,057,645	-				-0.0
2,057,646	+				+0.4
2,057,646	+				+0.6
2,057,647	-				-0.2
2,057,647	-				-0.4