Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4911

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4909 and GFF4910 are separated by 4 nucleotidesGFF4910 and GFF4911 overlap by 8 nucleotidesGFF4911 and GFF4912 are separated by 54 nucleotidesGFF4912 and GFF4913 are separated by 42 nucleotides GFF4909 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 1,924,810 to 1,925,994 GFF4909 GFF4910 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 1,925,999 to 1,926,820 GFF4910 GFF4911 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 1,926,813 to 1,927,553 GFF4911 GFF4912 - Ribosome recycling factor, at 1,927,608 to 1,928,168 GFF4912 GFF4913 - Uridine monophosphate kinase (EC 2.7.4.22), at 1,928,211 to 1,928,921 GFF4913 Position (kb) 1926 1927 1928Strain fitness (log2 ratio) -2 -1 0 1at 1928.178 kb on + strandat 1928.179 kb on - strandat 1928.179 kb on - strandat 1928.179 kb on - strandat 1928.179 kb on - strandat 1928.179 kb on - strandat 1928.224 kb on - strandat 1928.224 kb on - strandat 1928.224 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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1,928,178 + +0.3
1,928,179 - -0.2
1,928,179 - +0.1
1,928,179 - -1.0
1,928,179 - +0.1
1,928,179 - -1.2
1,928,224 - -2.1
1,928,224 - -2.3
1,928,224 - -1.8

Or see this region's nucleotide sequence