Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4890

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,902,069	-				-0.6
1,902,069	-				+1.7
1,902,074	+				+1.7
1,902,108	-				+0.9
1,902,188	+				+3.4
1,902,188	+				+4.0
1,902,188	+				+3.2
1,902,189	-				+3.2
1,902,189	-				+2.5
1,902,269	+				+1.7
1,902,269	+				+0.7
1,902,270	-				+2.9
1,902,270	-				+2.3
1,902,312	-				+1.6
1,902,312	-				+2.2
1,902,323	+				+2.2
1,902,323	+				+2.3
1,902,324	-				+1.7
1,902,324	-				+3.8
1,902,605	+		GFF4890	0.20	+1.7
1,902,605	+		GFF4890	0.20	+1.7
1,902,605	+		GFF4890	0.20	+0.9
1,902,605	+		GFF4890	0.20	-0.9
1,902,605	+		GFF4890	0.20	+1.4
1,902,605	+		GFF4890	0.20	+2.5
1,902,606	-		GFF4890	0.20	+2.3
1,902,606	-		GFF4890	0.20	+3.0
1,902,606	-		GFF4890	0.20	+2.3
1,902,606	-		GFF4890	0.20	+2.2
1,902,606	-		GFF4890	0.20	+2.4
1,902,684	-		GFF4890	0.23	+3.3
1,902,684	-		GFF4890	0.23	+2.5
1,902,684	-		GFF4890	0.23	+2.3
1,902,686	+		GFF4890	0.23	+1.6
1,902,686	+		GFF4890	0.23	+1.9
1,902,686	+		GFF4890	0.23	+2.1
1,902,686	+		GFF4890	0.23	+3.5
1,902,687	-		GFF4890	0.23	+2.1
1,902,771	-		GFF4890	0.27	+3.2
1,902,947	+		GFF4890	0.33	+3.8
1,902,948	-		GFF4890	0.33	+3.5
1,902,948	-		GFF4890	0.33	+3.6
1,902,950	+		GFF4890	0.33	+4.0
1,902,951	-		GFF4890	0.33	+4.0
1,902,951	-		GFF4890	0.33	+3.6
1,902,989	+		GFF4890	0.35	+3.6
1,902,989	+		GFF4890	0.35	+3.8
1,902,989	+		GFF4890	0.35	+0.4
1,902,990	-		GFF4890	0.35	+4.3
1,903,076	+		GFF4890	0.38	+4.1
1,903,076	+		GFF4890	0.38	+4.2
1,903,076	+		GFF4890	0.38	+4.8
1,903,076	+		GFF4890	0.38	+3.3
1,903,077	-		GFF4890	0.38	+3.5
1,903,079	+		GFF4890	0.38	+3.7
1,903,080	-		GFF4890	0.38	+3.6
1,903,080	-		GFF4890	0.38	+2.9
1,903,080	-		GFF4890	0.38	+2.7
1,903,109	+		GFF4890	0.39	+3.2
1,903,110	-		GFF4890	0.39	+3.4
1,903,110	-		GFF4890	0.39	+0.7
1,903,110	-		GFF4890	0.39	+1.6
1,903,110	-		GFF4890	0.39	+2.4
1,903,130	+		GFF4890	0.40	+2.9
1,903,131	-		GFF4890	0.40	+2.8
1,903,131	-		GFF4890	0.40	+1.6
1,903,131	-		GFF4890	0.40	+2.7
1,903,131	-		GFF4890	0.40	+1.5
1,903,250	+		GFF4890	0.45	+3.7
1,903,250	+		GFF4890	0.45	+3.3
1,903,433	+		GFF4890	0.52	+1.7
1,903,434	+		GFF4890	0.52	+1.4
1,903,754	+		GFF4890	0.64	+3.2
1,904,141	+		GFF4890	0.78	+2.8
1,904,294	+		GFF4890	0.84	+3.3
1,904,295	-		GFF4890	0.84	+3.3
1,904,336	+		GFF4890	0.86	+3.7
1,904,336	+		GFF4890	0.86	+3.0
1,904,337	-		GFF4890	0.86	+2.4
1,904,337	-		GFF4890	0.86	+2.3
1,904,510	+				+3.2
1,904,510	+				+3.4
1,904,511	-				+3.4
1,904,511	-				+3.6
1,904,808	-				+0.3
1,904,808	-				+0.2
1,904,808	-				-1.9
1,904,865	+		GFF4891	0.49	-0.1
1,904,865	+		GFF4891	0.49	-0.4
1,904,865	+		GFF4891	0.49	-0.3
1,904,866	-		GFF4891	0.50	-0.1
1,904,866	-		GFF4891	0.50	-0.3
1,904,866	-		GFF4891	0.50	-0.1
1,904,935	+				-0.1
1,905,118	+				-3.1
1,905,118	+				-1.4
1,905,119	-				-1.2
1,905,119	-				-2.4
1,905,119	-				-2.5
1,905,119	-				-1.2
1,905,364	+		GFF4892	0.16	-3.8
1,905,364	+		GFF4892	0.16	-0.9
1,905,365	-		GFF4892	0.16	-3.9
1,905,365	-		GFF4892	0.16	-4.3
1,905,365	-		GFF4892	0.16	-2.2
1,905,365	-		GFF4892	0.16	-1.3
1,905,475	+		GFF4892	0.21	-1.9
1,905,475	+		GFF4892	0.21	-1.7
1,905,475	+		GFF4892	0.21	-3.1
1,905,476	-		GFF4892	0.21	-1.8
1,905,476	-		GFF4892	0.21	-2.4
1,905,476	-		GFF4892	0.21	-1.2
1,905,575	-		GFF4892	0.24	-2.2
1,905,575	-		GFF4892	0.24	-3.1
1,905,575	-		GFF4892	0.24	-2.3
1,905,628	+		GFF4892	0.27	-1.1
1,905,628	+		GFF4892	0.27	-3.6
1,905,628	+		GFF4892	0.27	-1.3