Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF479

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF477 and GFF478 are separated by 96 nucleotidesGFF478 and GFF479 overlap by 4 nucleotidesGFF479 and GFF480 are separated by 49 nucleotides GFF477 - 1,2-diacylglycerol 3-glucosyltransferase (EC 2.4.1.157); diglucosyldiacylglycerol synthase (LTA membrane anchor synthesis); putative, at 140,965 to 142,137 GFF477 GFF478 - Acyclic terpenes utilization regulator AtuR, TetR family, at 142,234 to 142,920 GFF478 GFF479 - Citronellol and citronellal dehydrogenase, at 142,917 to 143,816 GFF479 GFF480 - Geranyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.5), at 143,866 to 145,413 GFF480 Position (kb) 142 143 144Strain fitness (log2 ratio) -1 0 1at 142.448 kb on - strand, within GFF478at 142.642 kb on + strand, within GFF478at 142.702 kb on + strand, within GFF478at 143.235 kb on + strand, within GFF479at 143.235 kb on + strand, within GFF479at 143.329 kb on - strand, within GFF479at 144.545 kb on - strand, within GFF480

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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142,448 - GFF478 0.31 -0.7
142,642 + GFF478 0.59 -0.2
142,702 + GFF478 0.68 +0.5
143,235 + GFF479 0.35 +0.2
143,235 + GFF479 0.35 -0.7
143,329 - GFF479 0.46 +0.9
144,545 - GFF480 0.44 -0.0

Or see this region's nucleotide sequence