Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4697

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,648,504	-		GFF4696	0.80	-0.0
1,648,608	+		GFF4696	0.84	+0.1
1,648,608	+		GFF4696	0.84	-0.2
1,648,698	+		GFF4696	0.87	+0.2
1,648,797	+				+0.7
1,648,938	+				+0.7
1,648,939	-				-0.8
1,648,939	-				+1.4
1,648,939	-				+1.3
1,649,032	+				+0.4
1,649,032	+				-0.2
1,649,033	-				-0.0
1,649,038	+				+0.1
1,649,039	-				-0.6
1,649,104	-				+2.2
1,649,286	+		GFF4697	0.19	-0.9
1,649,286	+		GFF4697	0.19	-0.5
1,649,286	+		GFF4697	0.19	-0.9
1,649,286	+		GFF4697	0.19	+0.5
1,649,286	+		GFF4697	0.19	+0.3
1,649,286	+		GFF4697	0.19	-0.5
1,649,286	+		GFF4697	0.19	-0.1
1,649,287	-		GFF4697	0.20	-0.3
1,649,287	-		GFF4697	0.20	-0.7
1,649,287	-		GFF4697	0.20	+0.1
1,649,310	+		GFF4697	0.22	-2.3
1,649,310	+		GFF4697	0.22	-0.1
1,649,310	+		GFF4697	0.22	+0.4
1,649,311	-		GFF4697	0.22	+0.2
1,649,311	-		GFF4697	0.22	-0.4
1,649,311	-		GFF4697	0.22	-0.4
1,649,311	-		GFF4697	0.22	-1.0
1,649,311	-		GFF4697	0.22	-0.8
1,649,311	-		GFF4697	0.22	+1.4
1,650,046	+				+0.6
1,650,046	+				+0.6
1,650,047	-				+0.5
1,650,072	+				-1.4
1,650,072	+				-0.0
1,650,072	+				+0.1
1,650,072	+				+0.0
1,650,072	+				+0.1
1,650,072	+				+0.9
1,650,073	-				-0.3
1,650,073	-				+0.2
1,650,073	-				-0.7
1,650,073	-				-0.4
1,650,186	+				-0.2
1,650,187	-				+0.3
1,650,203	-				+0.1
1,650,203	-				+0.7
1,650,210	-				+1.5
1,650,245	+				+0.0
1,650,245	+				-0.6
1,650,246	-				-0.7
1,650,252	+				+0.0
1,650,252	+				+0.4
1,650,253	-				+0.6
1,650,313	+				+0.9
1,650,313	+				-0.6
1,650,313	+				+0.6
1,650,314	-				+1.4
1,650,314	-				-0.4
1,650,314	-				-0.3
1,650,328	+				+0.0
1,650,328	+				+0.2
1,650,328	+				+0.2
1,650,329	-				+0.8
1,650,331	+				+0.3
1,650,331	+				-0.3
1,650,331	+				-0.8
1,650,331	+				-1.0
1,650,332	-				+1.1
1,650,332	-				-0.4
1,650,332	-				+0.7
1,650,332	-				+0.0
1,650,520	+		GFF4698	0.49	+0.4
1,650,520	+		GFF4698	0.49	+0.8
1,650,521	-		GFF4698	0.49	+0.4