Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4462

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,388,487	-		GFF4460	0.86	+1.1
1,388,487	-		GFF4460	0.86	+0.3
1,389,058	+		GFF4461	0.59	+0.3
1,389,058	+		GFF4461	0.59	+0.9
1,389,317	-		GFF4461	0.89	+1.3
1,389,317	-		GFF4461	0.89	+1.0
1,389,361	+				+0.9
1,389,987	+		GFF4462	0.47	+0.1
1,389,996	+		GFF4462	0.48	+0.1
1,389,996	+		GFF4462	0.48	+1.0
1,389,997	-		GFF4462	0.48	-1.6
1,389,997	-		GFF4462	0.48	-0.5
1,389,997	-		GFF4462	0.48	-0.3
1,390,173	+		GFF4462	0.63	+0.1
1,390,285	-		GFF4462	0.72	+2.0
1,390,414	-		GFF4462	0.82	-0.6
1,390,775	+		GFF4463	0.30	+0.0
1,390,776	-		GFF4463	0.31	-0.1
1,390,776	-		GFF4463	0.31	-1.3
1,390,776	-		GFF4463	0.31	+0.5
1,391,023	+		GFF4463	0.80	+0.1
1,391,151	+				+0.3
1,391,151	+				-0.4
1,391,152	-				-0.7
1,391,152	-				-0.9
1,391,152	-				-0.5
1,391,311	+		GFF4464	0.12	-0.2