Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4454

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,381,787	+		GFF4453	0.58	+0.3
1,381,845	-		GFF4453	0.62	-0.9
1,382,943	+		GFF4454	0.51	-0.1
1,382,943	+		GFF4454	0.51	-2.5
1,382,943	+		GFF4454	0.51	+0.3
1,382,943	+		GFF4454	0.51	+0.5
1,382,943	+		GFF4454	0.51	+0.5
1,382,943	+		GFF4454	0.51	+0.3
1,382,944	-		GFF4454	0.51	-0.2
1,382,944	-		GFF4454	0.51	+0.3
1,383,150	+		GFF4454	0.71	-0.6
1,383,285	+		GFF4454	0.84	-0.1
1,383,496	+				+0.7
1,383,910	+		GFF4455	0.30	+0.9
1,383,910	+		GFF4455	0.30	+1.2
1,383,911	-		GFF4455	0.30	-0.9
1,383,991	+		GFF4455	0.39	+1.6
1,383,992	-		GFF4455	0.39	-0.0
1,384,034	-		GFF4455	0.44	-0.2