Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3789 and GFF3790 are separated by 148 nucleotides GFF3790 and GFF3791 are separated by 81 nucleotides
GFF3789 - Methionine synthase II (cobalamin-independent), at 689,087 to 690,217
GFF3789
GFF3790 - Transcriptional regulator, GntR family, at 690,366 to 691,139
GFF3790
GFF3791 - TRAP transporter solute receptor, unknown substrate 3, at 691,221 to 692,354
GFF3791
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.427 kb on + strand, within GFF3789 at 689.427 kb on + strand, within GFF3789 at 689.427 kb on + strand, within GFF3789 at 689.428 kb on - strand, within GFF3789 at 689.428 kb on - strand, within GFF3789 at 689.607 kb on + strand, within GFF3789 at 689.607 kb on + strand, within GFF3789 at 689.607 kb on + strand, within GFF3789 at 689.637 kb on + strand, within GFF3789 at 689.637 kb on + strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.638 kb on - strand, within GFF3789 at 689.680 kb on - strand, within GFF3789 at 689.690 kb on + strand, within GFF3789 at 689.691 kb on - strand, within GFF3789 at 689.691 kb on - strand, within GFF3789 at 689.701 kb on - strand, within GFF3789 at 689.701 kb on - strand, within GFF3789 at 689.845 kb on - strand, within GFF3789 at 689.845 kb on - strand, within GFF3789 at 690.003 kb on + strand, within GFF3789 at 690.003 kb on + strand, within GFF3789 at 690.004 kb on - strand, within GFF3789 at 690.004 kb on - strand, within GFF3789 at 690.004 kb on - strand, within GFF3789 at 690.004 kb on - strand, within GFF3789 at 690.154 kb on - strand at 690.351 kb on + strand at 690.351 kb on + strand at 690.352 kb on - strand at 690.360 kb on + strand at 690.598 kb on - strand, within GFF3790 at 690.792 kb on + strand, within GFF3790 at 690.792 kb on + strand, within GFF3790 at 691.165 kb on + strand at 691.178 kb on + strand at 691.179 kb on - strand at 691.611 kb on + strand, within GFF3791 at 691.701 kb on + strand, within GFF3791 at 691.702 kb on - strand, within GFF3791 at 691.702 kb on - strand, within GFF3791 at 691.713 kb on + strand, within GFF3791 at 691.713 kb on + strand, within GFF3791 at 691.713 kb on + strand, within GFF3791 at 692.028 kb on + strand, within GFF3791 at 692.028 kb on + strand, within GFF3791 at 692.029 kb on - strand, within GFF3791 at 692.029 kb on - strand, within GFF3791 at 692.067 kb on + strand, within GFF3791 at 692.067 kb on + strand, within GFF3791 at 692.068 kb on - strand, within GFF3791
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 689,427 + GFF3789 0.30 +0.3 689,427 + GFF3789 0.30 -1.0 689,427 + GFF3789 0.30 +1.1 689,428 - GFF3789 0.30 +0.3 689,428 - GFF3789 0.30 -0.3 689,607 + GFF3789 0.46 +0.3 689,607 + GFF3789 0.46 -0.1 689,607 + GFF3789 0.46 -0.3 689,637 + GFF3789 0.49 +0.1 689,637 + GFF3789 0.49 +0.4 689,638 - GFF3789 0.49 +0.5 689,638 - GFF3789 0.49 -1.1 689,638 - GFF3789 0.49 +0.6 689,638 - GFF3789 0.49 +0.2 689,680 - GFF3789 0.52 -0.5 689,690 + GFF3789 0.53 +1.1 689,691 - GFF3789 0.53 +0.2 689,691 - GFF3789 0.53 +0.2 689,701 - GFF3789 0.54 +0.7 689,701 - GFF3789 0.54 +0.5 689,845 - GFF3789 0.67 +0.7 689,845 - GFF3789 0.67 -0.5 690,003 + GFF3789 0.81 -0.4 690,003 + GFF3789 0.81 +0.1 690,004 - GFF3789 0.81 -0.1 690,004 - GFF3789 0.81 -0.5 690,004 - GFF3789 0.81 +0.5 690,004 - GFF3789 0.81 +0.1 690,154 - +2.1 690,351 + -0.3 690,351 + -1.8 690,352 - -0.6 690,360 + +0.4 690,598 - GFF3790 0.30 +0.7 690,792 + GFF3790 0.55 +0.2 690,792 + GFF3790 0.55 +1.1 691,165 + +1.0 691,178 + +0.0 691,179 - +0.4 691,611 + GFF3791 0.34 -1.0 691,701 + GFF3791 0.42 -0.3 691,702 - GFF3791 0.42 +0.4 691,702 - GFF3791 0.42 -0.2 691,713 + GFF3791 0.43 -0.3 691,713 + GFF3791 0.43 +0.7 691,713 + GFF3791 0.43 -0.1 692,028 + GFF3791 0.71 -0.2 692,028 + GFF3791 0.71 +0.0 692,029 - GFF3791 0.71 +1.0 692,029 - GFF3791 0.71 -1.5 692,067 + GFF3791 0.75 -0.8 692,067 + GFF3791 0.75 -0.8 692,068 - GFF3791 0.75 -0.4
Or see this region's nucleotide sequence