Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3750

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
643,867	+		GFF3748	0.70	-0.7
643,867	+		GFF3748	0.70	-1.5
643,868	-		GFF3748	0.70	+0.6
644,346	+		GFF3749	0.38	-0.3
644,346	+		GFF3749	0.38	-0.7
644,641	-		GFF3749	0.77	+1.8
644,856	-				+0.0
644,891	+				+0.1
644,891	+				-0.1
644,894	+				+0.9
645,236	+		GFF3750	0.52	+0.2
645,236	+		GFF3750	0.52	-1.6
645,236	+		GFF3750	0.52	-0.2
645,237	-		GFF3750	0.53	-0.4
645,245	+		GFF3750	0.54	+0.3
645,245	+		GFF3750	0.54	-0.2
645,246	-		GFF3750	0.54	-0.0
645,531	-				+0.5
645,598	+				+0.4
645,599	-				-0.3
645,648	+				-0.3
645,648	+				-0.4
645,648	+				-2.1
645,675	+				+0.2
645,675	+				+0.2
645,723	+				-0.3
645,723	+				+0.2
645,793	-		GFF3751	0.15	-0.2
645,864	+		GFF3751	0.22	-0.4
646,005	+		GFF3751	0.36	+0.2
646,005	+		GFF3751	0.36	+0.3
646,006	-		GFF3751	0.36	-1.0
646,006	-		GFF3751	0.36	+0.5
646,006	-		GFF3751	0.36	+0.1
646,194	+		GFF3751	0.55	+0.3
646,194	+		GFF3751	0.55	-0.5
646,195	-		GFF3751	0.55	+0.0
646,195	-		GFF3751	0.55	-0.2
646,197	+		GFF3751	0.55	+0.3
646,197	+		GFF3751	0.55	+0.5
646,198	-		GFF3751	0.55	+0.1
646,198	-		GFF3751	0.55	+0.0
646,198	-		GFF3751	0.55	-0.3
646,212	+		GFF3751	0.56	-0.2
646,213	-		GFF3751	0.56	+0.2
646,470	+		GFF3751	0.82	+0.4
646,536	+		GFF3751	0.89	-0.4
646,536	+		GFF3751	0.89	-0.0
646,536	+		GFF3751	0.89	-0.3
646,536	+		GFF3751	0.89	-0.4
646,537	-		GFF3751	0.89	+0.9