Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3678 and GFF3679 are separated by 20 nucleotides GFF3679 and GFF3680 are separated by 55 nucleotides GFF3680 and GFF5787 are separated by 182 nucleotides GFF5787 and GFF3681 are separated by 51 nucleotides GFF3681 and GFF3682 are separated by 34 nucleotides
GFF3678 - Quinone oxidoreductase (EC 1.6.5.5), at 569,031 to 570,020
GFF3678
GFF3679 - Triosephosphate isomerase (EC 5.3.1.1), at 570,041 to 570,787
GFF3679
GFF3680 - Preprotein translocase subunit SecG (TC 3.A.5.1.1), at 570,843 to 571,226
GFF3680
GFF5787 - tRNA-Leu-GAG, at 571,409 to 571,490
GFF5787
GFF3681 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 571,542 to 571,901
GFF3681
GFF3682 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 571,936 to 572,415
GFF3682
Position (kb) 570
571
572 Strain fitness (log2 ratio) -2
-1
0
1 at 570.827 kb on + strand at 571.068 kb on + strand, within GFF3680 at 571.068 kb on + strand, within GFF3680 at 571.068 kb on + strand, within GFF3680 at 571.069 kb on - strand, within GFF3680 at 571.069 kb on - strand, within GFF3680 at 571.224 kb on + strand at 571.224 kb on + strand at 571.224 kb on + strand at 571.225 kb on - strand at 571.225 kb on - strand at 571.225 kb on - strand at 571.307 kb on + strand at 571.307 kb on + strand at 571.346 kb on + strand at 571.346 kb on + strand at 571.353 kb on + strand at 571.353 kb on + strand at 571.534 kb on + strand at 571.534 kb on + strand at 571.668 kb on + strand, within GFF3681 at 571.867 kb on - strand at 571.949 kb on + strand at 571.950 kb on - strand at 572.080 kb on + strand, within GFF3682
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 570,827 + +0.1 571,068 + GFF3680 0.59 -0.8 571,068 + GFF3680 0.59 +0.5 571,068 + GFF3680 0.59 -1.1 571,069 - GFF3680 0.59 -1.1 571,069 - GFF3680 0.59 -0.7 571,224 + +0.5 571,224 + -0.4 571,224 + -0.2 571,225 - -1.9 571,225 - -1.8 571,225 - -0.5 571,307 + +0.2 571,307 + -0.3 571,346 + -1.0 571,346 + +0.9 571,353 + -2.1 571,353 + -1.6 571,534 + -1.0 571,534 + -2.7 571,668 + GFF3681 0.35 -1.8 571,867 - -1.5 571,949 + +1.3 571,950 - +0.2 572,080 + GFF3682 0.30 -2.3
Or see this region's nucleotide sequence