Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3626 and GFF3627 overlap by 12 nucleotides GFF3627 and GFF3628 are separated by 222 nucleotides GFF3628 and GFF3629 overlap by 4 nucleotides
GFF3626 - L-lactate dehydrogenase (EC 1.1.2.3), at 512,636 to 513,799
GFF3626
GFF3627 - putative exported protein, at 513,788 to 514,330
GFF3627
GFF3628 - Ornithine cyclodeaminase (EC 4.3.1.12), at 514,553 to 515,455
GFF3628
GFF3629 - Metallo-beta-lactamase family protein, at 515,452 to 516,576
GFF3629
Position (kb) 514
515
516 Strain fitness (log2 ratio) -1
0
1 at 513.829 kb on + strand at 513.829 kb on + strand at 513.830 kb on - strand at 513.930 kb on + strand, within GFF3627 at 513.978 kb on + strand, within GFF3627 at 514.977 kb on - strand, within GFF3628 at 515.421 kb on + strand at 515.471 kb on + strand at 516.017 kb on + strand, within GFF3629 at 516.018 kb on - strand, within GFF3629 at 516.018 kb on - strand, within GFF3629 at 516.047 kb on + strand, within GFF3629 at 516.047 kb on + strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.048 kb on - strand, within GFF3629 at 516.087 kb on - strand, within GFF3629 at 516.152 kb on + strand, within GFF3629 at 516.152 kb on + strand, within GFF3629 at 516.152 kb on + strand, within GFF3629
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 513,829 + -0.2 513,829 + -0.4 513,830 - -1.0 513,930 + GFF3627 0.26 -0.2 513,978 + GFF3627 0.35 -0.5 514,977 - GFF3628 0.47 -1.1 515,421 + +1.0 515,471 + -0.0 516,017 + GFF3629 0.50 +0.3 516,018 - GFF3629 0.50 -0.0 516,018 - GFF3629 0.50 -1.7 516,047 + GFF3629 0.53 -0.5 516,047 + GFF3629 0.53 -1.1 516,048 - GFF3629 0.53 -0.1 516,048 - GFF3629 0.53 +0.7 516,048 - GFF3629 0.53 +0.3 516,048 - GFF3629 0.53 +0.5 516,048 - GFF3629 0.53 +0.2 516,087 - GFF3629 0.56 +0.3 516,152 + GFF3629 0.62 -0.8 516,152 + GFF3629 0.62 +0.3 516,152 + GFF3629 0.62 -0.2
Or see this region's nucleotide sequence