Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3535 and GFF3536 are separated by 24 nucleotides GFF3536 and GFF3537 are separated by 103 nucleotides GFF3537 and GFF3538 are separated by 23 nucleotides
GFF3535 - Tricarboxylate transport protein TctC, at 425,707 to 426,672
GFF3535
GFF3536 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 426,697 to 428,283
GFF3536
GFF3537 - CopG protein, at 428,387 to 429,115
GFF3537
GFF3538 - Copper tolerance protein, at 429,139 to 429,654
GFF3538
Position (kb) 426
427
428
429 Strain fitness (log2 ratio) -2
-1
0
1 at 425.810 kb on - strand, within GFF3535 at 425.962 kb on - strand, within GFF3535 at 425.962 kb on - strand, within GFF3535 at 425.962 kb on - strand, within GFF3535 at 426.103 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.160 kb on + strand, within GFF3535 at 426.161 kb on - strand, within GFF3535 at 426.161 kb on - strand, within GFF3535 at 426.161 kb on - strand, within GFF3535 at 426.247 kb on + strand, within GFF3535 at 426.388 kb on + strand, within GFF3535 at 427.896 kb on - strand, within GFF3536 at 427.896 kb on - strand, within GFF3536 at 427.952 kb on + strand, within GFF3536 at 427.953 kb on - strand, within GFF3536 at 427.953 kb on - strand, within GFF3536 at 428.007 kb on - strand, within GFF3536 at 428.007 kb on - strand, within GFF3536 at 428.190 kb on - strand at 428.190 kb on - strand at 428.343 kb on + strand at 428.343 kb on + strand at 428.343 kb on + strand at 428.344 kb on - strand at 428.344 kb on - strand at 428.344 kb on - strand at 428.344 kb on - strand at 428.362 kb on + strand at 428.363 kb on - strand at 428.419 kb on - strand at 428.718 kb on + strand, within GFF3537 at 428.719 kb on - strand, within GFF3537 at 428.719 kb on - strand, within GFF3537 at 428.739 kb on + strand, within GFF3537 at 428.739 kb on + strand, within GFF3537 at 428.740 kb on - strand, within GFF3537 at 428.895 kb on + strand, within GFF3537 at 429.281 kb on + strand, within GFF3538 at 429.281 kb on + strand, within GFF3538 at 429.281 kb on + strand, within GFF3538
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 425,810 - GFF3535 0.11 +0.6 425,962 - GFF3535 0.26 +0.2 425,962 - GFF3535 0.26 -2.1 425,962 - GFF3535 0.26 +0.9 426,103 + GFF3535 0.41 -0.1 426,160 + GFF3535 0.47 +0.8 426,160 + GFF3535 0.47 -0.3 426,160 + GFF3535 0.47 +0.4 426,160 + GFF3535 0.47 -0.1 426,160 + GFF3535 0.47 -0.1 426,161 - GFF3535 0.47 -0.3 426,161 - GFF3535 0.47 +1.0 426,161 - GFF3535 0.47 -0.3 426,247 + GFF3535 0.56 -1.7 426,388 + GFF3535 0.70 +0.2 427,896 - GFF3536 0.76 +0.1 427,896 - GFF3536 0.76 +0.2 427,952 + GFF3536 0.79 -0.3 427,953 - GFF3536 0.79 -0.1 427,953 - GFF3536 0.79 +0.6 428,007 - GFF3536 0.83 +0.1 428,007 - GFF3536 0.83 -1.4 428,190 - -0.4 428,190 - +0.3 428,343 + -0.0 428,343 + +0.1 428,343 + -0.3 428,344 - +0.1 428,344 - -0.8 428,344 - +0.5 428,344 - +0.0 428,362 + -1.0 428,363 - -1.3 428,419 - +0.0 428,718 + GFF3537 0.45 -0.6 428,719 - GFF3537 0.46 +0.9 428,719 - GFF3537 0.46 -0.0 428,739 + GFF3537 0.48 -0.1 428,739 + GFF3537 0.48 +0.3 428,740 - GFF3537 0.48 +0.2 428,895 + GFF3537 0.70 +0.4 429,281 + GFF3538 0.28 -0.5 429,281 + GFF3538 0.28 +0.5 429,281 + GFF3538 0.28 +0.7
Or see this region's nucleotide sequence