Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3499 and GFF3500 are separated by 51 nucleotides GFF3500 and GFF3501 are separated by 700 nucleotides
GFF3499 - hypothetical protein, at 378,374 to 379,195
GFF3499
GFF3500 - Mll5900 protein, at 379,247 to 379,549
GFF3500
GFF3501 - Mll5901 protein, at 380,250 to 380,846
GFF3501
Position (kb) 379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 378.331 kb on + strand at 378.332 kb on - strand at 378.548 kb on + strand, within GFF3499 at 378.549 kb on - strand, within GFF3499 at 378.645 kb on + strand, within GFF3499 at 378.720 kb on + strand, within GFF3499 at 378.721 kb on - strand, within GFF3499 at 379.127 kb on + strand at 379.127 kb on + strand at 379.127 kb on + strand at 379.127 kb on + strand at 379.128 kb on - strand at 379.128 kb on - strand at 379.128 kb on - strand at 379.131 kb on + strand at 379.198 kb on + strand at 379.198 kb on + strand at 379.198 kb on + strand at 379.199 kb on - strand at 379.199 kb on - strand at 379.199 kb on - strand at 379.199 kb on - strand at 379.209 kb on + strand at 379.210 kb on - strand at 379.224 kb on + strand at 379.224 kb on + strand at 379.245 kb on - strand at 379.245 kb on - strand at 379.422 kb on + strand, within GFF3500 at 379.573 kb on + strand at 379.574 kb on - strand at 379.785 kb on + strand at 379.785 kb on + strand at 379.786 kb on - strand at 379.981 kb on + strand at 379.982 kb on - strand at 379.982 kb on - strand at 380.025 kb on + strand at 380.026 kb on - strand at 380.026 kb on - strand at 380.060 kb on + strand at 380.067 kb on + strand at 380.067 kb on + strand at 380.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 378,331 + +2.1 378,332 - -0.1 378,548 + GFF3499 0.21 -0.0 378,549 - GFF3499 0.21 +0.4 378,645 + GFF3499 0.33 -0.3 378,720 + GFF3499 0.42 -0.5 378,721 - GFF3499 0.42 -1.5 379,127 + -0.1 379,127 + -0.0 379,127 + -0.4 379,127 + +0.2 379,128 - -0.3 379,128 - +1.1 379,128 - +0.1 379,131 + -2.2 379,198 + +0.8 379,198 + -0.0 379,198 + -0.2 379,199 - +1.0 379,199 - -0.1 379,199 - -0.3 379,199 - +0.2 379,209 + +0.5 379,210 - +0.6 379,224 + +0.1 379,224 + +1.1 379,245 - +0.0 379,245 - -0.1 379,422 + GFF3500 0.58 -1.3 379,573 + +0.4 379,574 - -0.5 379,785 + +0.2 379,785 + +0.6 379,786 - +0.3 379,981 + +0.4 379,982 - +0.2 379,982 - +0.3 380,025 + +0.7 380,026 - -0.5 380,026 - -0.9 380,060 + +0.2 380,067 + +0.1 380,067 + +0.2 380,115 + +0.2
Or see this region's nucleotide sequence