Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3478 and GFF3479 are separated by 305 nucleotides GFF3479 and GFF3480 are separated by 271 nucleotides GFF3480 and GFF3481 overlap by 4 nucleotides
GFF3478 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 359,036 to 360,040
GFF3478
GFF3479 - Type IV secretory pathway, VirD2 components (relaxase), at 360,346 to 362,304
GFF3479
GFF3480 - Type IV secretory pathway, protease TraF, at 362,576 to 363,139
GFF3480
GFF3481 - Glycosidases, at 363,136 to 363,717
GFF3481
Position (kb) 360
361
362
363 Strain fitness (log2 ratio) -1
0
1 at 359.402 kb on + strand, within GFF3478 at 359.402 kb on + strand, within GFF3478 at 359.434 kb on - strand, within GFF3478 at 359.821 kb on + strand, within GFF3478 at 359.965 kb on - strand at 360.099 kb on + strand at 360.189 kb on + strand at 360.190 kb on - strand at 360.190 kb on - strand at 360.305 kb on + strand at 360.306 kb on - strand at 360.333 kb on + strand at 360.334 kb on - strand at 360.403 kb on + strand at 360.423 kb on + strand at 360.528 kb on - strand at 360.528 kb on - strand at 360.610 kb on + strand, within GFF3479 at 360.611 kb on - strand, within GFF3479 at 360.980 kb on - strand, within GFF3479 at 361.188 kb on - strand, within GFF3479 at 361.691 kb on + strand, within GFF3479 at 361.692 kb on - strand, within GFF3479 at 361.996 kb on - strand, within GFF3479 at 362.015 kb on + strand, within GFF3479 at 362.326 kb on - strand at 362.646 kb on + strand, within GFF3480 at 363.260 kb on + strand, within GFF3481 at 363.261 kb on - strand, within GFF3481
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 359,402 + GFF3478 0.36 -0.3 359,402 + GFF3478 0.36 +0.4 359,434 - GFF3478 0.40 +0.2 359,821 + GFF3478 0.78 +0.2 359,965 - +0.5 360,099 + -0.3 360,189 + +1.0 360,190 - -1.6 360,190 - -1.1 360,305 + +0.2 360,306 - +1.2 360,333 + -0.4 360,334 - +1.0 360,403 + -0.2 360,423 + -0.1 360,528 - -0.5 360,528 - -0.1 360,610 + GFF3479 0.13 +0.6 360,611 - GFF3479 0.14 -0.1 360,980 - GFF3479 0.32 +0.2 361,188 - GFF3479 0.43 +0.5 361,691 + GFF3479 0.69 +0.0 361,692 - GFF3479 0.69 +0.8 361,996 - GFF3479 0.84 +0.8 362,015 + GFF3479 0.85 -0.2 362,326 - -0.4 362,646 + GFF3480 0.12 -0.2 363,260 + GFF3481 0.21 -0.2 363,261 - GFF3481 0.21 +0.7
Or see this region's nucleotide sequence