Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3398 and GFF3399 are separated by 40 nucleotides GFF3399 and GFF3400 overlap by 1 nucleotides GFF3400 and GFF3401 are separated by 4 nucleotides
GFF3398 - hypothetical protein, at 282,535 to 283,764
GFF3398
GFF3399 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 283,805 to 284,854
GFF3399
GFF3400 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 284,854 to 285,738
GFF3400
GFF3401 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 285,743 to 287,683
GFF3401
Position (kb) 283
284
285 Strain fitness (log2 ratio) -1
0
1 at 282.926 kb on + strand, within GFF3398 at 283.190 kb on + strand, within GFF3398 at 284.161 kb on - strand, within GFF3399 at 284.331 kb on + strand, within GFF3399 at 284.332 kb on - strand, within GFF3399 at 284.478 kb on + strand, within GFF3399 at 284.601 kb on + strand, within GFF3399 at 284.830 kb on + strand at 284.972 kb on + strand, within GFF3400 at 284.972 kb on + strand, within GFF3400 at 284.973 kb on - strand, within GFF3400 at 285.654 kb on - strand at 285.719 kb on + strand at 285.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 282,926 + GFF3398 0.32 -0.1 283,190 + GFF3398 0.53 +0.9 284,161 - GFF3399 0.34 +0.1 284,331 + GFF3399 0.50 +0.7 284,332 - GFF3399 0.50 +0.9 284,478 + GFF3399 0.64 -0.2 284,601 + GFF3399 0.76 +1.0 284,830 + -0.6 284,972 + GFF3400 0.13 -0.8 284,972 + GFF3400 0.13 -0.1 284,973 - GFF3400 0.13 +0.2 285,654 - -0.7 285,719 + +0.7 285,823 - +0.1
Or see this region's nucleotide sequence