Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3382 and GFF3383 are separated by 70 nucleotides GFF3383 and GFF3384 are separated by 26 nucleotides GFF3384 and GFF3385 are separated by 2 nucleotides
GFF3382 - Aconitate hydratase (EC 4.2.1.3), at 264,751 to 267,615
GFF3382
GFF3383 - peptidase S1 and S6, chymotrypsin/Hap, at 267,686 to 268,588
GFF3383
GFF3384 - MoxR-like ATPase in aerotolerance operon, at 268,615 to 269,616
GFF3384
GFF3385 - hypothetical protein PA3071, at 269,619 to 270,689
GFF3385
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1 at 267.689 kb on + strand at 267.690 kb on - strand at 267.690 kb on - strand at 267.690 kb on - strand at 267.690 kb on - strand at 268.023 kb on - strand, within GFF3383 at 268.294 kb on - strand, within GFF3383 at 268.585 kb on - strand at 268.587 kb on - strand at 268.587 kb on - strand at 268.666 kb on + strand at 268.667 kb on - strand at 268.667 kb on - strand at 268.879 kb on + strand, within GFF3384 at 268.879 kb on + strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 269.096 kb on - strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.293 kb on + strand, within GFF3384 at 269.294 kb on - strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.444 kb on - strand, within GFF3384 at 269.460 kb on + strand, within GFF3384 at 269.509 kb on + strand, within GFF3384 at 269.510 kb on - strand, within GFF3384 at 269.767 kb on - strand, within GFF3385 at 269.767 kb on - strand, within GFF3385
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 267,689 + +0.3 267,690 - +0.2 267,690 - +0.1 267,690 - +0.3 267,690 - +0.9 268,023 - GFF3383 0.37 +0.2 268,294 - GFF3383 0.67 -0.1 268,585 - +1.0 268,587 - +0.1 268,587 - +1.1 268,666 + +0.6 268,667 - +1.1 268,667 - +0.5 268,879 + GFF3384 0.26 +0.0 268,879 + GFF3384 0.26 -0.9 268,880 - GFF3384 0.26 +0.4 268,880 - GFF3384 0.26 +0.1 268,880 - GFF3384 0.26 -0.7 268,880 - GFF3384 0.26 -2.0 269,096 - GFF3384 0.48 +0.5 269,269 + GFF3384 0.65 +0.3 269,269 + GFF3384 0.65 +0.0 269,269 + GFF3384 0.65 +0.3 269,269 + GFF3384 0.65 -0.2 269,270 - GFF3384 0.65 -0.0 269,270 - GFF3384 0.65 -0.9 269,270 - GFF3384 0.65 +0.2 269,270 - GFF3384 0.65 +0.6 269,293 + GFF3384 0.68 -0.1 269,294 - GFF3384 0.68 +0.4 269,443 + GFF3384 0.83 +0.1 269,443 + GFF3384 0.83 -0.0 269,443 + GFF3384 0.83 +0.8 269,443 + GFF3384 0.83 +0.5 269,443 + GFF3384 0.83 -0.8 269,444 - GFF3384 0.83 +0.7 269,460 + GFF3384 0.84 +0.3 269,509 + GFF3384 0.89 -0.1 269,510 - GFF3384 0.89 +0.9 269,767 - GFF3385 0.14 -0.7 269,767 - GFF3385 0.14 +0.5
Or see this region's nucleotide sequence