Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3323 and GFF3324 are separated by 4 nucleotides GFF3324 and GFF3325 overlap by 12 nucleotides GFF3325 and GFF3326 are separated by 74 nucleotides
GFF3323 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 208,784 to 209,815
GFF3323
GFF3324 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22), at 209,820 to 211,205
GFF3324
GFF3325 - hypothetical protein, at 211,194 to 211,322
GFF3325
GFF3326 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 211,397 to 212,281
GFF3326
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 208.944 kb on + strand, within GFF3323 at 208.944 kb on + strand, within GFF3323 at 208.944 kb on + strand, within GFF3323 at 208.945 kb on - strand, within GFF3323 at 208.945 kb on - strand, within GFF3323 at 209.103 kb on + strand, within GFF3323 at 209.104 kb on - strand, within GFF3323 at 209.104 kb on - strand, within GFF3323 at 209.136 kb on + strand, within GFF3323 at 209.137 kb on - strand, within GFF3323 at 209.148 kb on + strand, within GFF3323 at 209.149 kb on - strand, within GFF3323 at 209.193 kb on + strand, within GFF3323 at 209.193 kb on + strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.194 kb on - strand, within GFF3323 at 209.272 kb on - strand, within GFF3323 at 209.355 kb on + strand, within GFF3323 at 209.356 kb on - strand, within GFF3323 at 209.416 kb on - strand, within GFF3323 at 209.529 kb on + strand, within GFF3323 at 209.529 kb on + strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.530 kb on - strand, within GFF3323 at 209.784 kb on + strand at 209.784 kb on + strand at 209.785 kb on - strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.821 kb on + strand at 209.854 kb on + strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.855 kb on - strand at 209.893 kb on + strand at 209.893 kb on + strand at 209.893 kb on + strand at 209.894 kb on - strand at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.974 kb on + strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 209.975 kb on - strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.001 kb on + strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.002 kb on - strand, within GFF3324 at 210.151 kb on + strand, within GFF3324 at 210.151 kb on + strand, within GFF3324 at 210.152 kb on - strand, within GFF3324 at 210.152 kb on - strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.502 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.799 kb on + strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.800 kb on - strand, within GFF3324 at 210.805 kb on + strand, within GFF3324 at 210.806 kb on - strand, within GFF3324 at 211.321 kb on - strand at 211.321 kb on - strand at 211.321 kb on - strand at 211.321 kb on - strand at 211.415 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.416 kb on + strand at 211.417 kb on - strand at 211.511 kb on + strand, within GFF3326 at 211.512 kb on - strand, within GFF3326 at 211.512 kb on - strand, within GFF3326 at 211.529 kb on + strand, within GFF3326 at 211.529 kb on + strand, within GFF3326 at 211.530 kb on - strand, within GFF3326 at 211.608 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.698 kb on - strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.859 kb on + strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.860 kb on - strand, within GFF3326 at 211.980 kb on + strand, within GFF3326 at 211.980 kb on + strand, within GFF3326 at 211.981 kb on - strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.033 kb on + strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.034 kb on - strand, within GFF3326 at 212.114 kb on - strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.171 kb on + strand, within GFF3326 at 212.172 kb on - strand, within GFF3326
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 208,944 + GFF3323 0.16 +1.8 208,944 + GFF3323 0.16 +1.6 208,944 + GFF3323 0.16 +1.1 208,945 - GFF3323 0.16 -1.6 208,945 - GFF3323 0.16 +0.2 209,103 + GFF3323 0.31 -0.1 209,104 - GFF3323 0.31 +0.2 209,104 - GFF3323 0.31 -1.0 209,136 + GFF3323 0.34 +0.3 209,137 - GFF3323 0.34 +0.4 209,148 + GFF3323 0.35 -0.2 209,149 - GFF3323 0.35 -0.3 209,193 + GFF3323 0.40 +0.6 209,193 + GFF3323 0.40 -0.2 209,194 - GFF3323 0.40 -0.4 209,194 - GFF3323 0.40 +0.1 209,194 - GFF3323 0.40 +0.3 209,272 - GFF3323 0.47 -0.1 209,355 + GFF3323 0.55 +0.2 209,356 - GFF3323 0.55 +0.1 209,416 - GFF3323 0.61 +0.7 209,529 + GFF3323 0.72 +0.2 209,529 + GFF3323 0.72 -0.5 209,530 - GFF3323 0.72 +0.1 209,530 - GFF3323 0.72 +1.6 209,530 - GFF3323 0.72 +0.5 209,530 - GFF3323 0.72 +0.6 209,784 + -0.2 209,784 + -0.1 209,785 - +1.1 209,821 + +0.7 209,821 + -0.0 209,821 + -0.6 209,854 + -0.7 209,855 - -0.8 209,855 - -0.1 209,855 - -0.1 209,855 - -0.8 209,855 - -0.9 209,855 - -0.6 209,855 - -0.8 209,893 + -2.7 209,893 + -1.0 209,893 + -2.9 209,894 - -2.2 209,974 + GFF3324 0.11 -1.7 209,974 + GFF3324 0.11 -1.6 209,974 + GFF3324 0.11 -1.3 209,974 + GFF3324 0.11 -2.0 209,974 + GFF3324 0.11 -2.2 209,974 + GFF3324 0.11 -2.4 209,975 - GFF3324 0.11 -1.3 209,975 - GFF3324 0.11 -2.5 209,975 - GFF3324 0.11 -2.1 209,975 - GFF3324 0.11 -2.9 209,975 - GFF3324 0.11 -1.9 210,001 + GFF3324 0.13 -1.7 210,001 + GFF3324 0.13 -1.4 210,001 + GFF3324 0.13 -1.6 210,001 + GFF3324 0.13 -1.5 210,001 + GFF3324 0.13 -1.5 210,001 + GFF3324 0.13 -1.2 210,001 + GFF3324 0.13 -1.5 210,002 - GFF3324 0.13 -3.0 210,002 - GFF3324 0.13 -1.9 210,002 - GFF3324 0.13 -1.2 210,002 - GFF3324 0.13 -1.7 210,002 - GFF3324 0.13 -1.3 210,151 + GFF3324 0.24 -2.0 210,151 + GFF3324 0.24 -2.0 210,152 - GFF3324 0.24 -1.6 210,152 - GFF3324 0.24 -1.7 210,502 + GFF3324 0.49 -3.9 210,502 + GFF3324 0.49 -0.5 210,799 + GFF3324 0.71 +0.5 210,799 + GFF3324 0.71 +0.5 210,799 + GFF3324 0.71 -1.5 210,799 + GFF3324 0.71 -1.9 210,800 - GFF3324 0.71 -1.5 210,800 - GFF3324 0.71 -1.8 210,805 + GFF3324 0.71 -1.7 210,806 - GFF3324 0.71 -1.7 211,321 - +0.2 211,321 - +0.3 211,321 - +0.5 211,321 - +0.4 211,415 + -1.7 211,416 + -3.6 211,416 + -1.9 211,416 + -2.0 211,416 + -2.7 211,416 + -0.5 211,417 - -3.1 211,511 + GFF3326 0.13 +0.1 211,512 - GFF3326 0.13 -3.3 211,512 - GFF3326 0.13 -0.9 211,529 + GFF3326 0.15 -2.0 211,529 + GFF3326 0.15 -0.5 211,530 - GFF3326 0.15 -1.5 211,608 - GFF3326 0.24 -2.7 211,698 - GFF3326 0.34 -1.7 211,698 - GFF3326 0.34 -3.1 211,698 - GFF3326 0.34 -1.2 211,698 - GFF3326 0.34 -2.0 211,698 - GFF3326 0.34 -2.1 211,859 + GFF3326 0.52 -2.7 211,859 + GFF3326 0.52 -1.9 211,859 + GFF3326 0.52 -2.0 211,859 + GFF3326 0.52 -2.8 211,860 - GFF3326 0.52 -1.9 211,860 - GFF3326 0.52 -4.0 211,860 - GFF3326 0.52 -0.8 211,860 - GFF3326 0.52 -1.5 211,860 - GFF3326 0.52 -2.5 211,980 + GFF3326 0.66 -3.9 211,980 + GFF3326 0.66 -2.6 211,981 - GFF3326 0.66 -2.9 212,033 + GFF3326 0.72 -3.2 212,033 + GFF3326 0.72 -2.1 212,033 + GFF3326 0.72 -2.7 212,033 + GFF3326 0.72 -1.6 212,033 + GFF3326 0.72 -2.6 212,034 - GFF3326 0.72 -0.7 212,034 - GFF3326 0.72 -2.7 212,034 - GFF3326 0.72 -0.3 212,034 - GFF3326 0.72 -3.0 212,114 - GFF3326 0.81 -3.2 212,171 + GFF3326 0.87 -2.6 212,171 + GFF3326 0.87 -2.0 212,172 - GFF3326 0.88 -3.4
Or see this region's nucleotide sequence