Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3253

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3252 and GFF3253 overlap by 4 nucleotidesGFF3253 and GFF3254 are separated by 25 nucleotidesGFF3254 and GFF3255 overlap by 4 nucleotides GFF3252 - Serine/threonine protein kinase (EC 2.7.11.1), at 134,548 to 135,555 GFF3252 GFF3253 - Protein phosphatase 2C-like, at 135,552 to 136,451 GFF3253 GFF3254 - Ribonuclease PH (EC 2.7.7.56), at 136,477 to 137,199 GFF3254 GFF3255 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 137,196 to 137,819 GFF3255 Position (kb) 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1at 134.644 kb on + strandat 134.644 kb on + strandat 134.645 kb on - strandat 134.689 kb on + strand, within GFF3252at 134.689 kb on + strand, within GFF3252at 134.690 kb on - strand, within GFF3252at 134.690 kb on - strand, within GFF3252at 134.690 kb on - strand, within GFF3252at 134.690 kb on - strand, within GFF3252at 134.765 kb on - strand, within GFF3252at 134.872 kb on + strand, within GFF3252at 134.872 kb on + strand, within GFF3252at 134.872 kb on + strand, within GFF3252at 134.873 kb on - strand, within GFF3252at 134.873 kb on - strand, within GFF3252at 134.873 kb on - strand, within GFF3252at 134.980 kb on + strand, within GFF3252at 135.148 kb on + strand, within GFF3252at 135.178 kb on + strand, within GFF3252at 135.179 kb on - strand, within GFF3252at 135.217 kb on + strand, within GFF3252at 135.217 kb on + strand, within GFF3252at 135.218 kb on - strand, within GFF3252at 135.218 kb on - strand, within GFF3252at 135.218 kb on - strand, within GFF3252at 135.238 kb on + strand, within GFF3252at 135.239 kb on - strand, within GFF3252at 135.239 kb on - strand, within GFF3252at 135.445 kb on + strand, within GFF3252at 135.446 kb on - strand, within GFF3252at 135.446 kb on - strand, within GFF3252at 135.457 kb on - strandat 135.457 kb on - strandat 135.567 kb on + strandat 135.567 kb on + strandat 135.568 kb on - strandat 135.568 kb on - strandat 135.618 kb on + strandat 135.619 kb on - strandat 135.619 kb on - strandat 135.624 kb on + strandat 135.624 kb on + strandat 135.624 kb on + strandat 135.624 kb on + strandat 135.624 kb on + strandat 135.624 kb on + strandat 135.625 kb on - strandat 135.625 kb on - strandat 135.625 kb on - strandat 135.723 kb on + strand, within GFF3253at 135.723 kb on + strand, within GFF3253at 135.724 kb on - strand, within GFF3253at 135.724 kb on - strand, within GFF3253at 135.724 kb on - strand, within GFF3253at 135.813 kb on + strand, within GFF3253at 135.918 kb on + strand, within GFF3253at 135.918 kb on + strand, within GFF3253at 135.919 kb on - strand, within GFF3253at 135.919 kb on - strand, within GFF3253at 135.919 kb on - strand, within GFF3253at 135.966 kb on + strand, within GFF3253at 135.966 kb on + strand, within GFF3253at 135.966 kb on + strand, within GFF3253at 135.966 kb on + strand, within GFF3253at 135.967 kb on - strand, within GFF3253at 135.967 kb on - strand, within GFF3253at 135.967 kb on - strand, within GFF3253at 135.967 kb on - strand, within GFF3253at 135.967 kb on - strand, within GFF3253at 136.477 kb on - strandat 136.537 kb on + strandat 136.537 kb on + strandat 136.537 kb on + strandat 136.537 kb on + strandat 136.538 kb on - strandat 136.666 kb on + strand, within GFF3254at 136.880 kb on - strand, within GFF3254at 137.008 kb on + strand, within GFF3254at 137.008 kb on + strand, within GFF3254at 137.009 kb on - strand, within GFF3254at 137.009 kb on - strand, within GFF3254at 137.009 kb on - strand, within GFF3254at 137.009 kb on - strand, within GFF3254at 137.451 kb on + strand, within GFF3255at 137.451 kb on + strand, within GFF3255

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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134,644 + -2.2
134,644 + -0.9
134,645 - -0.6
134,689 + GFF3252 0.14 -1.3
134,689 + GFF3252 0.14 -1.1
134,690 - GFF3252 0.14 -1.7
134,690 - GFF3252 0.14 -1.2
134,690 - GFF3252 0.14 -1.6
134,690 - GFF3252 0.14 -1.9
134,765 - GFF3252 0.22 +1.5
134,872 + GFF3252 0.32 -1.9
134,872 + GFF3252 0.32 -0.7
134,872 + GFF3252 0.32 -0.5
134,873 - GFF3252 0.32 -0.1
134,873 - GFF3252 0.32 -0.4
134,873 - GFF3252 0.32 -0.9
134,980 + GFF3252 0.43 -1.8
135,148 + GFF3252 0.60 -1.3
135,178 + GFF3252 0.62 -2.8
135,179 - GFF3252 0.63 -0.8
135,217 + GFF3252 0.66 -1.6
135,217 + GFF3252 0.66 -0.8
135,218 - GFF3252 0.66 -0.3
135,218 - GFF3252 0.66 -2.0
135,218 - GFF3252 0.66 -3.0
135,238 + GFF3252 0.68 -2.0
135,239 - GFF3252 0.69 -2.2
135,239 - GFF3252 0.69 +1.5
135,445 + GFF3252 0.89 -0.6
135,446 - GFF3252 0.89 -0.3
135,446 - GFF3252 0.89 -0.6
135,457 - +1.2
135,457 - -0.6
135,567 + -0.5
135,567 + -0.3
135,568 - -0.8
135,568 - +0.3
135,618 + -0.6
135,619 - -0.4
135,619 - -0.5
135,624 + +0.1
135,624 + -0.5
135,624 + -0.6
135,624 + +0.2
135,624 + -1.2
135,624 + -0.8
135,625 - -1.0
135,625 - -0.3
135,625 - +0.2
135,723 + GFF3253 0.19 -2.1
135,723 + GFF3253 0.19 -1.1
135,724 - GFF3253 0.19 +0.6
135,724 - GFF3253 0.19 -0.5
135,724 - GFF3253 0.19 -0.1
135,813 + GFF3253 0.29 -0.4
135,918 + GFF3253 0.41 +0.2
135,918 + GFF3253 0.41 -0.7
135,919 - GFF3253 0.41 +0.1
135,919 - GFF3253 0.41 -0.4
135,919 - GFF3253 0.41 +0.5
135,966 + GFF3253 0.46 +0.3
135,966 + GFF3253 0.46 -0.6
135,966 + GFF3253 0.46 -0.4
135,966 + GFF3253 0.46 +0.2
135,967 - GFF3253 0.46 -0.9
135,967 - GFF3253 0.46 -0.9
135,967 - GFF3253 0.46 +0.4
135,967 - GFF3253 0.46 -0.5
135,967 - GFF3253 0.46 -0.3
136,477 - +0.2
136,537 + +0.3
136,537 + -0.3
136,537 + +0.2
136,537 + +0.2
136,538 - -1.0
136,666 + GFF3254 0.26 +0.8
136,880 - GFF3254 0.56 +0.7
137,008 + GFF3254 0.73 +0.1
137,008 + GFF3254 0.73 -0.4
137,009 - GFF3254 0.74 -0.9
137,009 - GFF3254 0.74 +0.3
137,009 - GFF3254 0.74 -0.2
137,009 - GFF3254 0.74 -0.1
137,451 + GFF3255 0.41 +0.2
137,451 + GFF3255 0.41 +0.1

Or see this region's nucleotide sequence