Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3129

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
6,278	-		GFF3128	0.47	+0.3
6,664	+		GFF3128	0.72	+0.2
6,664	+		GFF3128	0.72	+0.0
6,665	-		GFF3128	0.72	-0.3
6,793	-		GFF3128	0.81	-0.1
7,375	+		GFF3129	0.64	+0.6
7,376	-		GFF3129	0.65	+0.3
7,376	-		GFF3129	0.65	-0.0
7,376	-		GFF3129	0.65	+1.5
7,839	+				-0.1
7,840	-				+0.1
7,840	-				+1.5
7,840	-				+0.5
7,840	-				-0.9
7,871	+				+0.0
8,179	-				+0.7
8,179	-				+0.0
8,191	+				-1.1
8,250	+				+0.2
8,330	+				-0.3
8,363	+				+0.7
8,363	+				-1.0
8,363	+				-0.1
8,364	-				-1.1
8,364	-				+0.5
8,492	-		GFF3131	0.23	-0.4
8,492	-		GFF3131	0.23	-0.3
8,492	-		GFF3131	0.23	-1.1
8,492	-		GFF3131	0.23	+0.2