Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2968

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
45,936	+		GFF2967	0.39	-0.5
45,937	-		GFF2967	0.39	-0.2
45,937	-		GFF2967	0.39	-2.4
45,937	-		GFF2967	0.39	+0.0
45,937	-		GFF2967	0.39	+0.5
46,003	-		GFF2967	0.45	-0.2
46,029	+		GFF2967	0.47	+0.2
46,029	+		GFF2967	0.47	+0.2
46,029	+		GFF2967	0.47	-0.3
46,030	-		GFF2967	0.47	-0.0
46,030	-		GFF2967	0.47	-0.2
46,030	-		GFF2967	0.47	-0.8
46,198	-		GFF2967	0.62	+0.1
46,203	+		GFF2967	0.63	+0.6
46,293	+		GFF2967	0.70	+0.4
46,294	-		GFF2967	0.71	-1.5
46,443	+		GFF2967	0.84	+0.1
46,555	-				+0.3
46,910	+		GFF2968	0.67	-0.2
46,910	+		GFF2968	0.67	-1.5
46,910	+		GFF2968	0.67	-0.3
46,910	+		GFF2968	0.67	+0.5
46,911	-		GFF2968	0.68	-0.5
47,046	+				+0.1
47,046	+				-0.0
47,046	+				-0.3
47,047	-				+0.8
47,047	-				-0.0
47,240	-		GFF2969	0.12	-1.0
47,240	-		GFF2969	0.12	+0.0
47,323	+		GFF2969	0.17	+0.8
47,323	+		GFF2969	0.17	+0.2
47,324	-		GFF2969	0.17	-0.5
47,324	-		GFF2969	0.17	+0.5
47,509	+		GFF2969	0.29	-0.4
47,509	+		GFF2969	0.29	-0.5
47,555	-		GFF2969	0.31	-0.3
47,704	+		GFF2969	0.41	+0.1
47,705	-		GFF2969	0.41	-0.8
47,705	-		GFF2969	0.41	+0.9
47,705	-		GFF2969	0.41	-0.3
47,866	+		GFF2969	0.51	-0.2
47,866	+		GFF2969	0.51	+0.1
47,867	-		GFF2969	0.51	-0.0
47,936	-		GFF2969	0.55	+0.0
47,936	-		GFF2969	0.55	+0.1
47,959	+		GFF2969	0.56	-0.3
47,960	-		GFF2969	0.56	+0.2