Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2914 and GFF2915 are separated by 15 nucleotides GFF2915 and GFF2916 are separated by 2 nucleotides GFF2916 and GFF2917 are separated by 16 nucleotides GFF2917 and GFF2918 are separated by 9 nucleotides GFF2918 and GFF2919 are separated by 129 nucleotides
GFF2914 - LSU ribosomal protein L22p (L17e), at 3,399 to 3,728
GFF2914
GFF2915 - SSU ribosomal protein S3p (S3e), at 3,744 to 4,619
GFF2915
GFF2916 - LSU ribosomal protein L16p (L10e), at 4,622 to 5,038
GFF2916
GFF2917 - LSU ribosomal protein L29p (L35e), at 5,055 to 5,261
GFF2917
GFF2918 - SSU ribosomal protein S17p (S11e), at 5,271 to 5,540
GFF2918
GFF2919 - Peroxiredoxin, at 5,670 to 6,176
GFF2919
Position (kb) 4
5
6 Strain fitness (log2 ratio) -1
0
1 at 5.617 kb on + strand at 5.618 kb on - strand at 5.618 kb on - strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.715 kb on + strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand at 5.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 5,617 + +0.2 5,618 - +0.2 5,618 - -0.7 5,715 + +0.0 5,715 + -0.5 5,715 + +0.0 5,715 + +0.7 5,715 + -1.0 5,715 + +0.0 5,715 + -0.4 5,715 + +0.0 5,716 - +1.1 5,716 - -0.7 5,716 - -0.2 5,716 - -0.0 5,716 - +0.9
Or see this region's nucleotide sequence