Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF27 and GFF28 are separated by 12 nucleotides GFF28 and GFF29 are separated by 174 nucleotides GFF29 and GFF30 are separated by 15 nucleotides
GFF27 - Pca regulon regulatory protein PcaR, at 25,177 to 25,941
GFF27
GFF28 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 25,954 to 26,481
GFF28
GFF29 - Transcriptional regulator, MarR family, at 26,656 to 27,123
GFF29
GFF30 - Cytosine deaminase (EC 3.5.4.1), at 27,139 to 28,488
GFF30
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.726 kb on + strand, within GFF27 at 25.726 kb on + strand, within GFF27 at 25.727 kb on - strand, within GFF27 at 25.727 kb on - strand, within GFF27 at 25.852 kb on + strand, within GFF27 at 25.853 kb on - strand, within GFF27 at 26.313 kb on - strand, within GFF28 at 26.313 kb on - strand, within GFF28 at 26.313 kb on - strand, within GFF28 at 26.378 kb on + strand, within GFF28 at 26.532 kb on - strand at 26.547 kb on + strand at 26.555 kb on - strand at 26.657 kb on + strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.963 kb on + strand, within GFF29 at 26.963 kb on + strand, within GFF29 at 26.964 kb on - strand, within GFF29 at 26.964 kb on - strand, within GFF29 at 27.236 kb on + strand at 27.237 kb on - strand at 27.237 kb on - strand at 27.413 kb on + strand, within GFF30 at 27.414 kb on - strand, within GFF30 at 27.428 kb on + strand, within GFF30 at 27.429 kb on - strand, within GFF30 at 27.548 kb on + strand, within GFF30 at 27.549 kb on - strand, within GFF30
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 25,726 + GFF27 0.72 -1.3 25,726 + GFF27 0.72 -0.7 25,727 - GFF27 0.72 +0.8 25,727 - GFF27 0.72 +0.2 25,852 + GFF27 0.88 +0.7 25,853 - GFF27 0.88 +0.4 26,313 - GFF28 0.68 +0.0 26,313 - GFF28 0.68 -0.2 26,313 - GFF28 0.68 +0.3 26,378 + GFF28 0.80 +0.0 26,532 - -0.2 26,547 + +1.0 26,555 - -1.7 26,657 + -0.3 26,658 - -0.7 26,658 - +0.0 26,658 - +0.1 26,963 + GFF29 0.66 -1.3 26,963 + GFF29 0.66 -1.2 26,964 - GFF29 0.66 -3.2 26,964 - GFF29 0.66 -0.2 27,236 + +0.1 27,237 - -0.3 27,237 - +0.1 27,413 + GFF30 0.20 -1.5 27,414 - GFF30 0.20 +0.2 27,428 + GFF30 0.21 -0.3 27,429 - GFF30 0.21 +0.4 27,548 + GFF30 0.30 -0.1 27,549 - GFF30 0.30 -1.0
Or see this region's nucleotide sequence