Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2897 and GFF2898 overlap by 4 nucleotides GFF2898 and GFF2899 are separated by 8 nucleotides GFF2899 and GFF2900 are separated by 182 nucleotides GFF2900 and GFF2901 are separated by 142 nucleotides
GFF2897 - Enoyl-CoA hydratase (EC 4.2.1.17), at 485,837 to 486,694
GFF2897
GFF2898 - Transcriptional regulator, MarR family, at 486,691 to 487,176
GFF2898
GFF2899 - probable bifunctional hydroxylase/oxidoreductase, at 487,185 to 489,545
GFF2899
GFF2900 - hypothetical protein, at 489,728 to 490,051
GFF2900
GFF2901 - Tricarboxylate transport protein TctC, at 490,194 to 491,210
GFF2901
Position (kb) 487
488
489
490 Strain fitness (log2 ratio) -2
-1
0
1 at 486.535 kb on - strand, within GFF2897 at 486.535 kb on - strand, within GFF2897 at 487.231 kb on + strand at 487.256 kb on - strand at 487.468 kb on + strand, within GFF2899 at 487.481 kb on - strand, within GFF2899 at 487.711 kb on + strand, within GFF2899 at 487.712 kb on - strand, within GFF2899 at 487.712 kb on - strand, within GFF2899 at 487.762 kb on + strand, within GFF2899 at 487.763 kb on - strand, within GFF2899 at 488.194 kb on + strand, within GFF2899 at 488.225 kb on - strand, within GFF2899 at 488.435 kb on - strand, within GFF2899 at 488.548 kb on + strand, within GFF2899 at 488.548 kb on + strand, within GFF2899 at 488.944 kb on + strand, within GFF2899 at 488.944 kb on + strand, within GFF2899 at 488.945 kb on - strand, within GFF2899 at 488.945 kb on - strand, within GFF2899 at 488.945 kb on - strand, within GFF2899 at 489.077 kb on - strand, within GFF2899 at 489.134 kb on - strand, within GFF2899 at 489.134 kb on - strand, within GFF2899 at 489.546 kb on - strand at 489.550 kb on - strand at 489.588 kb on - strand at 489.634 kb on + strand at 489.634 kb on + strand at 489.635 kb on - strand at 489.703 kb on + strand at 489.704 kb on - strand at 489.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 486,535 - GFF2897 0.81 -1.0 486,535 - GFF2897 0.81 -0.6 487,231 + -0.4 487,256 - +1.0 487,468 + GFF2899 0.12 -0.7 487,481 - GFF2899 0.13 -1.8 487,711 + GFF2899 0.22 -1.0 487,712 - GFF2899 0.22 -0.2 487,712 - GFF2899 0.22 -0.2 487,762 + GFF2899 0.24 -0.2 487,763 - GFF2899 0.24 -1.0 488,194 + GFF2899 0.43 +0.8 488,225 - GFF2899 0.44 -0.2 488,435 - GFF2899 0.53 -0.5 488,548 + GFF2899 0.58 -1.1 488,548 + GFF2899 0.58 +0.7 488,944 + GFF2899 0.75 -0.4 488,944 + GFF2899 0.75 +0.6 488,945 - GFF2899 0.75 -1.8 488,945 - GFF2899 0.75 -0.9 488,945 - GFF2899 0.75 -0.1 489,077 - GFF2899 0.80 -0.2 489,134 - GFF2899 0.83 -0.4 489,134 - GFF2899 0.83 +0.5 489,546 - -1.0 489,550 - +0.2 489,588 - -0.6 489,634 + +0.2 489,634 + -0.1 489,635 - +0.0 489,703 + +1.3 489,704 - +0.5 489,704 - +0.2
Or see this region's nucleotide sequence