Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2849 and GFF2850 are separated by 87 nucleotides GFF2850 and GFF2851 are separated by 18 nucleotides GFF2851 and GFF2852 overlap by 4 nucleotides GFF2852 and GFF2853 are separated by 60 nucleotides
GFF2849 - Type IV pilin PilA, at 438,011 to 438,862
GFF2849
GFF2850 - Proline sensor-regulator PrlR, at 438,950 to 439,570
GFF2850
GFF2851 - FIG00444883: hypothetical protein, at 439,589 to 440,938
GFF2851
GFF2852 - hypothetical protein, at 440,935 to 441,051
GFF2852
GFF2853 - probable two-component sensor, at 441,112 to 442,866
GFF2853
Position (kb) 439
440
441 Strain fitness (log2 ratio) -1
0
1
2 at 438.605 kb on + strand, within GFF2849 at 438.605 kb on + strand, within GFF2849 at 438.606 kb on - strand, within GFF2849 at 438.606 kb on - strand, within GFF2849 at 438.668 kb on + strand, within GFF2849 at 438.668 kb on + strand, within GFF2849 at 438.668 kb on + strand, within GFF2849 at 438.713 kb on + strand, within GFF2849 at 438.714 kb on - strand, within GFF2849 at 439.510 kb on - strand at 439.822 kb on - strand, within GFF2851 at 439.875 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.043 kb on + strand, within GFF2851 at 440.044 kb on - strand, within GFF2851 at 440.103 kb on + strand, within GFF2851 at 440.173 kb on - strand, within GFF2851 at 440.628 kb on + strand, within GFF2851 at 440.628 kb on + strand, within GFF2851 at 440.628 kb on + strand, within GFF2851 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.376 kb on + strand, within GFF2853 at 441.377 kb on - strand, within GFF2853 at 441.377 kb on - strand, within GFF2853 at 441.377 kb on - strand, within GFF2853 at 441.377 kb on - strand, within GFF2853 at 441.377 kb on - strand, within GFF2853 at 441.425 kb on - strand, within GFF2853 at 441.466 kb on + strand, within GFF2853
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 438,605 + GFF2849 0.70 +0.5 438,605 + GFF2849 0.70 +0.2 438,606 - GFF2849 0.70 +0.0 438,606 - GFF2849 0.70 +0.9 438,668 + GFF2849 0.77 -0.2 438,668 + GFF2849 0.77 +0.8 438,668 + GFF2849 0.77 +0.3 438,713 + GFF2849 0.82 +0.0 438,714 - GFF2849 0.83 -0.5 439,510 - +1.9 439,822 - GFF2851 0.17 +0.9 439,875 + GFF2851 0.21 -0.5 440,043 + GFF2851 0.34 -0.4 440,043 + GFF2851 0.34 +0.2 440,043 + GFF2851 0.34 -0.1 440,043 + GFF2851 0.34 +0.1 440,043 + GFF2851 0.34 -0.4 440,043 + GFF2851 0.34 -0.1 440,044 - GFF2851 0.34 +0.5 440,103 + GFF2851 0.38 +0.3 440,173 - GFF2851 0.43 +0.4 440,628 + GFF2851 0.77 +0.3 440,628 + GFF2851 0.77 -1.1 440,628 + GFF2851 0.77 +1.0 441,376 + GFF2853 0.15 +0.3 441,376 + GFF2853 0.15 +0.1 441,376 + GFF2853 0.15 +0.2 441,376 + GFF2853 0.15 -0.2 441,376 + GFF2853 0.15 +0.5 441,376 + GFF2853 0.15 -0.4 441,376 + GFF2853 0.15 -0.4 441,376 + GFF2853 0.15 -0.1 441,376 + GFF2853 0.15 +0.5 441,376 + GFF2853 0.15 -0.4 441,376 + GFF2853 0.15 -0.5 441,377 - GFF2853 0.15 +0.2 441,377 - GFF2853 0.15 +0.3 441,377 - GFF2853 0.15 +1.2 441,377 - GFF2853 0.15 -0.3 441,377 - GFF2853 0.15 +0.1 441,425 - GFF2853 0.18 -0.1 441,466 + GFF2853 0.20 -0.7
Or see this region's nucleotide sequence