Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF267 and GFF268 are separated by 12 nucleotides GFF268 and GFF269 are separated by 4 nucleotides GFF269 and GFF270 are separated by 17 nucleotides GFF270 and GFF271 are separated by 68 nucleotides
GFF267 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 280,940 to 282,187
GFF267
GFF268 - Transcriptional regulator, LysR family, at 282,200 to 282,715
GFF268
GFF269 - putative exported protein, at 282,720 to 283,061
GFF269
GFF270 - Transcriptional regulator, LysR family, at 283,079 to 284,062
GFF270
GFF271 - amidohydrolase 2, at 284,131 to 285,051
GFF271
Position (kb) 283
284
285 Strain fitness (log2 ratio) -1
0
1 at 282.309 kb on - strand, within GFF268 at 282.498 kb on + strand, within GFF268 at 282.499 kb on - strand, within GFF268 at 282.499 kb on - strand, within GFF268 at 282.499 kb on - strand, within GFF268 at 282.636 kb on + strand, within GFF268 at 282.637 kb on - strand, within GFF268 at 282.852 kb on + strand, within GFF269 at 282.852 kb on + strand, within GFF269 at 282.852 kb on + strand, within GFF269 at 282.852 kb on + strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 282.853 kb on - strand, within GFF269 at 283.012 kb on - strand, within GFF269 at 283.275 kb on + strand, within GFF270 at 283.275 kb on + strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 283.276 kb on - strand, within GFF270 at 284.081 kb on + strand at 284.081 kb on + strand at 284.093 kb on - strand at 284.098 kb on + strand at 284.297 kb on - strand, within GFF271 at 284.297 kb on - strand, within GFF271 at 284.297 kb on - strand, within GFF271 at 284.368 kb on + strand, within GFF271 at 284.386 kb on + strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.387 kb on - strand, within GFF271 at 284.587 kb on + strand, within GFF271 at 284.588 kb on - strand, within GFF271 at 284.732 kb on - strand, within GFF271 at 284.732 kb on - strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.788 kb on + strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271 at 284.789 kb on - strand, within GFF271
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 282,309 - GFF268 0.21 -0.6 282,498 + GFF268 0.58 -0.1 282,499 - GFF268 0.58 -0.3 282,499 - GFF268 0.58 -0.1 282,499 - GFF268 0.58 +0.4 282,636 + GFF268 0.84 -0.3 282,637 - GFF268 0.85 +0.2 282,852 + GFF269 0.39 +0.3 282,852 + GFF269 0.39 +0.0 282,852 + GFF269 0.39 -0.2 282,852 + GFF269 0.39 +0.1 282,853 - GFF269 0.39 -0.3 282,853 - GFF269 0.39 -0.3 282,853 - GFF269 0.39 +0.8 282,853 - GFF269 0.39 +0.6 283,012 - GFF269 0.85 -0.3 283,275 + GFF270 0.20 -1.0 283,275 + GFF270 0.20 -0.4 283,276 - GFF270 0.20 +0.0 283,276 - GFF270 0.20 +0.1 283,276 - GFF270 0.20 +0.1 283,276 - GFF270 0.20 +0.0 284,081 + +0.9 284,081 + +0.1 284,093 - +0.8 284,098 + -0.8 284,297 - GFF271 0.18 +0.6 284,297 - GFF271 0.18 +1.4 284,297 - GFF271 0.18 +1.4 284,368 + GFF271 0.26 -1.6 284,386 + GFF271 0.28 -0.1 284,387 - GFF271 0.28 -0.0 284,387 - GFF271 0.28 -0.4 284,387 - GFF271 0.28 +0.2 284,387 - GFF271 0.28 +0.4 284,587 + GFF271 0.50 -0.0 284,588 - GFF271 0.50 -0.5 284,732 - GFF271 0.65 -1.2 284,732 - GFF271 0.65 -0.3 284,788 + GFF271 0.71 +0.0 284,788 + GFF271 0.71 +0.4 284,788 + GFF271 0.71 +0.2 284,789 - GFF271 0.71 +0.2 284,789 - GFF271 0.71 -0.4 284,789 - GFF271 0.71 -0.1 284,789 - GFF271 0.71 -0.5 284,789 - GFF271 0.71 +1.2
Or see this region's nucleotide sequence