Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2676 and GFF2677 overlap by 29 nucleotides GFF2677 and GFF2678 are separated by 53 nucleotides GFF2678 and GFF2679 are separated by 115 nucleotides
GFF2676 - Tricarboxylate transport protein TctC, at 266,056 to 267,042
GFF2676
GFF2677 - Transcriptional regulator, MarR family, at 267,014 to 267,532
GFF2677
GFF2678 - Salicylate hydroxylase (EC 1.14.13.1), at 267,586 to 269,292
GFF2678
GFF2679 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 269,408 to 270,562
GFF2679
Position (kb) 267
268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.620 kb on + strand, within GFF2676 at 266.621 kb on - strand, within GFF2676 at 267.865 kb on + strand, within GFF2678 at 267.998 kb on + strand, within GFF2678 at 267.998 kb on - strand, within GFF2678 at 267.998 kb on - strand, within GFF2678 at 268.154 kb on - strand, within GFF2678 at 268.268 kb on - strand, within GFF2678 at 268.321 kb on + strand, within GFF2678 at 268.321 kb on + strand, within GFF2678 at 268.321 kb on + strand, within GFF2678 at 268.321 kb on + strand, within GFF2678 at 268.322 kb on - strand, within GFF2678 at 268.322 kb on - strand, within GFF2678 at 268.322 kb on - strand, within GFF2678 at 268.322 kb on - strand, within GFF2678 at 268.541 kb on - strand, within GFF2678 at 268.699 kb on + strand, within GFF2678 at 268.700 kb on - strand, within GFF2678 at 268.742 kb on - strand, within GFF2678 at 268.874 kb on - strand, within GFF2678 at 268.967 kb on - strand, within GFF2678 at 269.344 kb on - strand at 269.438 kb on - strand at 269.873 kb on + strand, within GFF2679 at 269.874 kb on - strand, within GFF2679 at 269.958 kb on - strand, within GFF2679 at 270.117 kb on - strand, within GFF2679 at 270.117 kb on - strand, within GFF2679 at 270.135 kb on - strand, within GFF2679 at 270.173 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.176 kb on + strand, within GFF2679 at 270.177 kb on - strand, within GFF2679
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 266,620 + GFF2676 0.57 -0.1 266,621 - GFF2676 0.57 +0.4 267,865 + GFF2678 0.16 +0.3 267,998 + GFF2678 0.24 +0.0 267,998 - GFF2678 0.24 +0.3 267,998 - GFF2678 0.24 -0.3 268,154 - GFF2678 0.33 -0.5 268,268 - GFF2678 0.40 -1.5 268,321 + GFF2678 0.43 -0.1 268,321 + GFF2678 0.43 -0.3 268,321 + GFF2678 0.43 +1.8 268,321 + GFF2678 0.43 +1.1 268,322 - GFF2678 0.43 +0.2 268,322 - GFF2678 0.43 +0.3 268,322 - GFF2678 0.43 +0.4 268,322 - GFF2678 0.43 -0.1 268,541 - GFF2678 0.56 -2.1 268,699 + GFF2678 0.65 +1.2 268,700 - GFF2678 0.65 +0.7 268,742 - GFF2678 0.68 -0.5 268,874 - GFF2678 0.75 +0.1 268,967 - GFF2678 0.81 -0.0 269,344 - -0.5 269,438 - -0.3 269,873 + GFF2679 0.40 +0.7 269,874 - GFF2679 0.40 -0.5 269,958 - GFF2679 0.48 -0.8 270,117 - GFF2679 0.61 +0.1 270,117 - GFF2679 0.61 +0.4 270,135 - GFF2679 0.63 -0.2 270,173 + GFF2679 0.66 +0.2 270,176 + GFF2679 0.66 -0.4 270,176 + GFF2679 0.66 -0.1 270,176 + GFF2679 0.66 +0.3 270,177 - GFF2679 0.67 -0.1
Or see this region's nucleotide sequence