Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2443

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2442 and GFF2443 are separated by 20 nucleotidesGFF2443 and GFF2444 overlap by 4 nucleotidesGFF2444 and GFF2445 are separated by 23 nucleotides GFF2442 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 23,781 to 24,779 GFF2442 GFF2443 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 24,800 to 25,336 GFF2443 GFF2444 - Probable transmembrane protein, at 25,333 to 26,004 GFF2444 GFF2445 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 26,028 to 26,840 GFF2445 Position (kb) 24 25 26Strain fitness (log2 ratio) -1 0 1at 24.893 kb on + strand, within GFF2443at 24.894 kb on - strand, within GFF2443at 26.217 kb on + strand, within GFF2445at 26.217 kb on + strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445at 26.218 kb on - strand, within GFF2445

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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24,893 + GFF2443 0.17 -1.3
24,894 - GFF2443 0.18 -0.4
26,217 + GFF2445 0.23 -0.5
26,217 + GFF2445 0.23 +0.0
26,218 - GFF2445 0.23 +1.0
26,218 - GFF2445 0.23 +0.1
26,218 - GFF2445 0.23 -0.4
26,218 - GFF2445 0.23 -0.2
26,218 - GFF2445 0.23 -0.1

Or see this region's nucleotide sequence