Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2341

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,227,829	+				+0.2
1,227,829	+				-0.5
1,227,830	-				+0.4
1,227,830	-				+0.1
1,227,851	+				-0.7
1,227,851	+				+0.4
1,227,852	-				-0.4
1,227,852	-				-0.0
1,227,865	+				+0.9
1,227,865	+				+0.9
1,227,866	-				-0.9
1,227,914	+				-0.6
1,227,915	-				-0.9
1,227,915	-				+0.5
1,228,139	+		GFF2340	0.54	-0.2
1,228,140	-		GFF2340	0.55	+0.8
1,228,140	-		GFF2340	0.55	-0.3
1,228,188	-		GFF2340	0.64	+0.1
1,228,188	-		GFF2340	0.64	-0.3
1,228,297	+		GFF2340	0.87	+0.5
1,228,297	+		GFF2340	0.87	-0.1
1,228,362	+				+0.1
1,228,362	+				+0.6
1,228,362	+				-0.3
1,228,362	+				+1.3
1,228,363	-				+0.4
1,228,458	+				+0.2
1,228,458	+				-0.0
1,228,458	+				+0.1
1,228,511	+				+0.9
1,228,512	-				-0.5
1,228,512	-				+0.8
1,228,631	+				+0.1
1,228,632	-				+1.3
1,228,632	-				+0.1
1,228,632	-				+0.8
1,228,633	-				-0.3
1,228,635	+				+0.1
1,228,636	+				+0.2
1,228,637	-				+0.1
1,228,637	-				-0.1
1,228,637	-				+1.9
1,228,758	+				-0.7
1,228,758	+				+0.3
1,228,758	+				+0.3
1,228,758	+				+0.0
1,228,758	+				+0.6
1,228,758	+				+0.5
1,228,896	+				+0.1
1,229,335	+		GFF2341	0.26	+0.8
1,229,335	+		GFF2341	0.26	-1.6
1,229,336	-		GFF2341	0.26	+0.1
1,229,336	-		GFF2341	0.26	-0.4
1,229,485	+		GFF2341	0.34	-1.1
1,229,486	-		GFF2341	0.34	+0.9
1,229,486	-		GFF2341	0.34	+0.9
1,229,551	+		GFF2341	0.37	-0.5
1,229,551	+		GFF2341	0.37	-0.3
1,229,552	-		GFF2341	0.37	+1.3
1,229,620	+		GFF2341	0.41	+0.1
1,229,620	+		GFF2341	0.41	-0.2
1,229,620	+		GFF2341	0.41	+0.1
1,229,621	-		GFF2341	0.41	+0.4
1,229,621	-		GFF2341	0.41	+0.3
1,229,621	-		GFF2341	0.41	-0.5
1,229,813	+		GFF2341	0.50	+0.1
1,229,813	+		GFF2341	0.50	-0.1
1,229,813	+		GFF2341	0.50	+0.3
1,229,814	-		GFF2341	0.50	-0.8
1,229,814	-		GFF2341	0.50	-0.3
1,229,824	+		GFF2341	0.51	+0.4
1,229,824	+		GFF2341	0.51	-0.4
1,229,824	+		GFF2341	0.51	+0.8
1,229,825	-		GFF2341	0.51	+0.8
1,230,382	+		GFF2341	0.79	+0.4
1,230,383	-		GFF2341	0.79	+0.0
1,230,400	+		GFF2341	0.80	-0.1
1,230,400	+		GFF2341	0.80	+1.5
1,230,521	-		GFF2341	0.86	-0.2
1,230,521	-		GFF2341	0.86	+0.5
1,230,588	+		GFF2341	0.89	-1.1
1,230,589	-		GFF2341	0.89	+0.0
1,230,589	-		GFF2341	0.89	-1.6
1,230,655	+				+0.2
1,230,655	+				+0.8
1,230,655	+				+0.7
1,230,656	-				-0.3
1,230,656	-				+0.0
1,230,673	+				-0.5
1,230,674	-				+0.2
1,230,723	-				-0.1
1,230,723	-				+0.1
1,230,723	-				-0.5
1,230,723	-				-0.8
1,230,723	-				-0.5
1,230,754	+				+1.2
1,230,754	+				-0.2
1,230,755	-				-0.6
1,230,755	-				+1.2
1,230,755	-				-0.6
1,230,755	-				-0.1
1,230,772	+				-0.1
1,230,773	-				+1.0
1,230,868	+				+0.5
1,230,869	-				-0.0
1,230,921	+				+0.3
1,230,922	-				+0.0
1,230,963	+				+0.1
1,231,202	+				+0.2
1,231,202	+				+0.5
1,231,203	-				-0.8
1,231,203	-				+1.3
1,231,325	+				-0.1
1,231,386	+				-0.1
1,231,463	+				-0.9
1,231,463	+				-0.7
1,231,463	+				+0.1
1,231,464	-				-0.2
1,231,464	-				+0.2
1,231,464	-				-0.1
1,231,537	+				-0.3
1,231,596	+				+0.3
1,231,597	-				-0.1
1,231,597	-				+0.1
1,231,597	-				+0.1
1,231,597	-				-1.5
1,231,597	-				+0.0
1,231,597	-				+0.0
1,231,600	+				+0.3
1,231,600	+				+0.2
1,231,600	+				-1.5
1,231,600	+				+0.5
1,231,604	+				+0.9
1,231,604	+				+0.5
1,231,604	+				+0.6
1,231,604	+				+1.0
1,231,605	-				+0.2
1,231,605	-				+0.3
1,231,605	-				-0.6
1,231,625	+				+0.5
1,231,626	-				+1.5
1,231,689	+				+0.1
1,231,690	-				+1.3
1,231,690	-				+0.0
1,231,738	+				+0.2
1,231,738	+				+0.1
1,231,738	+				-0.0
1,231,738	+				+0.5
1,231,738	+				+0.3
1,231,739	-				-0.4
1,231,739	-				+0.9
1,231,739	-				-0.3
1,231,739	-				-0.2
1,231,739	-				-0.4
1,231,766	+				-0.1
1,231,767	-				+0.0