Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2339

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,225,459	-		GFF2338	0.52	+0.4
1,225,460	-		GFF2338	0.52	+0.4
1,225,497	+		GFF2338	0.54	-0.0
1,225,497	+		GFF2338	0.54	-0.4
1,225,497	+		GFF2338	0.54	+0.8
1,225,498	-		GFF2338	0.54	+0.5
1,225,498	-		GFF2338	0.54	+0.3
1,225,940	-		GFF2338	0.79	+0.1
1,226,124	+				-0.0
1,226,169	+				+0.1
1,226,169	-				+0.5
1,226,192	+				+0.0
1,226,193	-				+0.1
1,226,193	-				+0.3
1,226,193	-				-0.1
1,226,240	-				+0.2
1,226,240	-				-0.5
1,226,264	-				-0.6
1,226,283	-				+0.7
1,226,406	+				+0.6
1,226,406	+				+0.9
1,226,406	+				+0.2
1,226,407	-				-1.2
1,226,407	-				-0.4
1,226,407	-				-0.0
1,226,495	+		GFF2339	0.12	+0.2
1,226,495	+		GFF2339	0.12	-0.1
1,226,495	+		GFF2339	0.12	-1.3
1,226,495	+		GFF2339	0.12	+0.3
1,226,495	+		GFF2339	0.12	-0.4
1,226,495	+		GFF2339	0.12	-0.7
1,226,495	+		GFF2339	0.12	-0.1
1,226,495	+		GFF2339	0.12	+0.2
1,226,495	+		GFF2339	0.12	+0.1
1,226,495	+		GFF2339	0.12	+0.2
1,226,495	+		GFF2339	0.12	+0.6
1,226,496	-		GFF2339	0.13	-0.0
1,226,496	-		GFF2339	0.13	-0.3
1,226,496	-		GFF2339	0.13	-0.4
1,226,496	-		GFF2339	0.13	-0.4
1,226,496	-		GFF2339	0.13	+0.3
1,226,496	-		GFF2339	0.13	+0.3
1,226,496	-		GFF2339	0.13	-0.1
1,226,502	+		GFF2339	0.13	+0.1
1,226,502	+		GFF2339	0.13	+1.4
1,226,503	-		GFF2339	0.13	+0.1
1,226,503	-		GFF2339	0.13	-0.5
1,226,503	-		GFF2339	0.13	+0.5
1,226,503	-		GFF2339	0.13	+0.0
1,226,638	+		GFF2339	0.22	+0.6
1,226,638	+		GFF2339	0.22	+0.1
1,226,638	+		GFF2339	0.22	+1.8
1,226,639	-		GFF2339	0.22	-0.9
1,226,639	-		GFF2339	0.22	+0.0
1,226,653	+		GFF2339	0.22	-0.5
1,226,654	-		GFF2339	0.23	+0.5
1,226,660	+		GFF2339	0.23	+0.6
1,226,660	+		GFF2339	0.23	+0.6
1,226,683	+		GFF2339	0.24	-0.4
1,226,683	+		GFF2339	0.24	-0.1
1,226,683	+		GFF2339	0.24	+0.8
1,226,684	-		GFF2339	0.24	-0.6
1,226,684	-		GFF2339	0.24	-0.5
1,226,690	+		GFF2339	0.25	-0.4
1,226,691	-		GFF2339	0.25	+0.3
1,226,691	-		GFF2339	0.25	-1.1
1,226,691	-		GFF2339	0.25	-0.1
1,226,799	+		GFF2339	0.32	-0.0
1,226,838	+		GFF2339	0.34	-1.2
1,226,838	+		GFF2339	0.34	+0.1
1,226,839	-		GFF2339	0.34	-0.8
1,226,847	+		GFF2339	0.35	-1.1
1,226,848	-		GFF2339	0.35	-0.8
1,226,964	+		GFF2339	0.42	-0.1
1,226,965	-		GFF2339	0.42	+0.4
1,226,965	-		GFF2339	0.42	+1.3
1,226,965	-		GFF2339	0.42	-0.3
1,226,966	+		GFF2339	0.42	-0.6
1,226,967	-		GFF2339	0.42	-1.3
1,226,970	+		GFF2339	0.43	+0.2
1,227,020	+		GFF2339	0.46	+0.5
1,227,020	+		GFF2339	0.46	+0.3
1,227,021	-		GFF2339	0.46	-0.6
1,227,021	-		GFF2339	0.46	+0.5
1,227,021	-		GFF2339	0.46	+0.4
1,227,021	-		GFF2339	0.46	+0.2
1,227,021	-		GFF2339	0.46	+0.0
1,227,071	+		GFF2339	0.49	-0.2
1,227,071	+		GFF2339	0.49	-0.3
1,227,071	+		GFF2339	0.49	+0.3
1,227,072	-		GFF2339	0.49	-0.2
1,227,072	-		GFF2339	0.49	-0.1
1,227,072	-		GFF2339	0.49	-0.4
1,227,091	+		GFF2339	0.50	+0.4
1,227,092	-		GFF2339	0.50	-0.2
1,227,092	-		GFF2339	0.50	-0.8
1,227,092	-		GFF2339	0.50	-0.1
1,227,092	-		GFF2339	0.50	-0.6
1,227,101	-		GFF2339	0.51	+0.7
1,227,130	-		GFF2339	0.53	+0.1
1,227,176	-		GFF2339	0.56	+0.8
1,227,201	+		GFF2339	0.57	-0.2
1,227,248	-		GFF2339	0.60	+0.3
1,227,293	+		GFF2339	0.63	-0.8
1,227,293	+		GFF2339	0.63	+1.0
1,227,294	-		GFF2339	0.63	+0.1
1,227,394	+		GFF2339	0.69	+0.2
1,227,498	+		GFF2339	0.76	+0.0
1,227,498	+		GFF2339	0.76	+0.1
1,227,559	+		GFF2339	0.80	-0.1
1,227,559	+		GFF2339	0.80	-1.6
1,227,559	+		GFF2339	0.80	+0.1
1,227,560	-		GFF2339	0.80	+0.3
1,227,560	-		GFF2339	0.80	+1.2
1,227,590	+		GFF2339	0.82	+1.1
1,227,613	+		GFF2339	0.83	+0.1
1,227,613	+		GFF2339	0.83	-1.3
1,227,613	+		GFF2339	0.83	-0.6
1,227,614	-		GFF2339	0.83	-0.3
1,227,614	-		GFF2339	0.83	+0.0
1,227,614	-		GFF2339	0.83	+0.1
1,227,614	-		GFF2339	0.83	+1.0
1,227,639	-		GFF2339	0.85	-0.1
1,227,646	+		GFF2339	0.85	-0.1
1,227,646	+		GFF2339	0.85	+0.5
1,227,647	-		GFF2339	0.85	-0.7
1,227,703	-		GFF2339	0.89	+1.5
1,227,703	-		GFF2339	0.89	-0.1
1,227,789	-				-0.0
1,227,789	-				+0.1
1,227,789	-				+0.3
1,227,789	-				-0.3
1,227,793	+				-0.2
1,227,793	+				-0.4
1,227,793	+				-0.2
1,227,793	+				+0.7
1,227,793	+				-0.3
1,227,793	+				-0.2
1,227,794	-				-0.6
1,227,794	-				+0.4
1,227,794	-				+0.1
1,227,794	-				+0.7
1,227,794	-				+0.5
1,227,794	-				+0.5
1,227,829	+				+0.2
1,227,829	+				-0.5
1,227,830	-				+0.4
1,227,830	-				+0.1
1,227,851	+				-0.7
1,227,851	+				+0.4
1,227,852	-				-0.4
1,227,852	-				-0.0
1,227,865	+				+0.9
1,227,865	+				+0.9
1,227,866	-				-0.9
1,227,914	+				-0.6
1,227,915	-				-0.9
1,227,915	-				+0.5
1,228,139	+		GFF2340	0.54	-0.2
1,228,140	-		GFF2340	0.55	+0.8
1,228,140	-		GFF2340	0.55	-0.3
1,228,188	-		GFF2340	0.64	+0.1
1,228,188	-		GFF2340	0.64	-0.3
1,228,297	+		GFF2340	0.87	+0.5
1,228,297	+		GFF2340	0.87	-0.1
1,228,362	+				+0.1
1,228,362	+				+0.6
1,228,362	+				-0.3
1,228,362	+				+1.3
1,228,363	-				+0.4
1,228,458	+				+0.2
1,228,458	+				-0.0
1,228,458	+				+0.1
1,228,511	+				+0.9
1,228,512	-				-0.5
1,228,512	-				+0.8
1,228,631	+				+0.1
1,228,632	-				+1.3
1,228,632	-				+0.1
1,228,632	-				+0.8
1,228,633	-				-0.3
1,228,635	+				+0.1
1,228,636	+				+0.2
1,228,637	-				+0.1
1,228,637	-				-0.1
1,228,637	-				+1.9
1,228,758	+				-0.7
1,228,758	+				+0.3
1,228,758	+				+0.3
1,228,758	+				+0.0
1,228,758	+				+0.6
1,228,758	+				+0.5