Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2004 and GFF2005 are separated by 2 nucleotides GFF2005 and GFF2006 are separated by 226 nucleotides GFF2006 and GFF2007 overlap by 18 nucleotides GFF2007 and GFF2008 overlap by 45 nucleotides
GFF2004 - hypothetical protein, at 880,371 to 880,721
GFF2004
GFF2005 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 880,724 to 881,290
GFF2005
GFF2006 - hypothetical protein, at 881,517 to 881,717
GFF2006
GFF2007 - hypothetical protein, at 881,700 to 881,828
GFF2007
GFF2008 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 881,784 to 883,208
GFF2008
Position (kb) 881
882 Strain fitness (log2 ratio) -1
0
1 at 880.765 kb on - strand at 880.765 kb on - strand at 880.839 kb on + strand, within GFF2005 at 880.840 kb on - strand, within GFF2005 at 880.840 kb on - strand, within GFF2005 at 881.100 kb on + strand, within GFF2005 at 881.453 kb on + strand at 881.453 kb on + strand at 881.453 kb on + strand at 881.453 kb on + strand at 881.454 kb on - strand at 881.454 kb on - strand at 881.454 kb on - strand at 881.701 kb on + strand at 881.701 kb on + strand at 881.701 kb on + strand at 881.702 kb on - strand at 881.741 kb on + strand, within GFF2007 at 881.741 kb on + strand, within GFF2007 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.938 kb on - strand, within GFF2008 at 882.393 kb on + strand, within GFF2008 at 882.393 kb on + strand, within GFF2008 at 882.465 kb on + strand, within GFF2008 at 882.465 kb on + strand, within GFF2008 at 882.466 kb on - strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.799 kb on - strand, within GFF2008 at 882.799 kb on - strand, within GFF2008
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 880,765 - -0.8 880,765 - +0.1 880,839 + GFF2005 0.20 -0.0 880,840 - GFF2005 0.20 +0.2 880,840 - GFF2005 0.20 -0.2 881,100 + GFF2005 0.66 -0.2 881,453 + +1.5 881,453 + +0.3 881,453 + -0.1 881,453 + -0.3 881,454 - -1.1 881,454 - -0.0 881,454 - -0.1 881,701 + -0.1 881,701 + +0.1 881,701 + -0.0 881,702 - -0.3 881,741 + GFF2007 0.32 -0.5 881,741 + GFF2007 0.32 -0.4 881,937 + GFF2008 0.11 +0.1 881,937 + GFF2008 0.11 -0.4 881,937 + GFF2008 0.11 -0.5 881,937 + GFF2008 0.11 +0.3 881,938 - GFF2008 0.11 -0.2 882,393 + GFF2008 0.43 -0.7 882,393 + GFF2008 0.43 -0.4 882,465 + GFF2008 0.48 +0.6 882,465 + GFF2008 0.48 +0.0 882,466 - GFF2008 0.48 +0.2 882,798 + GFF2008 0.71 -1.0 882,798 + GFF2008 0.71 -0.0 882,798 + GFF2008 0.71 -0.0 882,799 - GFF2008 0.71 +0.7 882,799 - GFF2008 0.71 +0.1
Or see this region's nucleotide sequence