Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1947 and GFF1948 are separated by 135 nucleotides GFF1948 and GFF1949 overlap by 4 nucleotides GFF1949 and GFF1950 are separated by 98 nucleotides GFF1950 and GFF1951 are separated by 4 nucleotides
GFF1947 - Cyanate ABC transporter, substrate binding protein, at 819,889 to 821,310
GFF1947
GFF1948 - Transcriptional regulatory protein UhpA, at 821,446 to 822,129
GFF1948
GFF1949 - Sensory box histidine kinase, at 822,126 to 823,340
GFF1949
GFF1950 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 823,439 to 824,020
GFF1950
GFF1951 - Integral membrane protein TerC, at 824,025 to 824,972
GFF1951
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1 at 821.151 kb on - strand, within GFF1947 at 821.288 kb on + strand at 821.288 kb on + strand at 821.288 kb on + strand at 821.431 kb on - strand at 821.540 kb on + strand, within GFF1948 at 821.628 kb on - strand, within GFF1948 at 821.786 kb on + strand, within GFF1948 at 821.786 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.822 kb on + strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.823 kb on - strand, within GFF1948 at 821.837 kb on + strand, within GFF1948 at 821.837 kb on + strand, within GFF1948 at 821.838 kb on - strand, within GFF1948 at 822.256 kb on + strand, within GFF1949 at 823.011 kb on - strand, within GFF1949 at 823.580 kb on + strand, within GFF1950 at 823.580 kb on + strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.581 kb on - strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.958 kb on + strand, within GFF1950 at 823.959 kb on - strand, within GFF1950 at 823.959 kb on - strand, within GFF1950 at 824.113 kb on + strand at 824.113 kb on + strand at 824.113 kb on + strand at 824.113 kb on + strand at 824.113 kb on + strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.114 kb on - strand at 824.134 kb on + strand, within GFF1951 at 824.170 kb on + strand, within GFF1951 at 824.170 kb on + strand, within GFF1951 at 824.170 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.259 kb on + strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951 at 824.260 kb on - strand, within GFF1951
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 821,151 - GFF1947 0.89 +0.1 821,288 + +0.2 821,288 + +0.9 821,288 + -0.5 821,431 - -0.1 821,540 + GFF1948 0.14 +0.5 821,628 - GFF1948 0.27 -0.2 821,786 + GFF1948 0.50 +1.2 821,786 + GFF1948 0.50 +0.3 821,822 + GFF1948 0.55 -0.1 821,822 + GFF1948 0.55 -0.7 821,822 + GFF1948 0.55 -0.0 821,823 - GFF1948 0.55 +0.2 821,823 - GFF1948 0.55 -0.6 821,823 - GFF1948 0.55 -0.0 821,837 + GFF1948 0.57 +0.2 821,837 + GFF1948 0.57 +1.0 821,838 - GFF1948 0.57 +0.4 822,256 + GFF1949 0.11 +0.0 823,011 - GFF1949 0.73 +0.4 823,580 + GFF1950 0.24 -0.4 823,580 + GFF1950 0.24 +0.1 823,581 - GFF1950 0.24 -0.7 823,581 - GFF1950 0.24 -0.7 823,581 - GFF1950 0.24 -0.7 823,581 - GFF1950 0.24 -0.0 823,581 - GFF1950 0.24 -1.3 823,581 - GFF1950 0.24 -0.3 823,581 - GFF1950 0.24 -0.2 823,958 + GFF1950 0.89 -1.2 823,958 + GFF1950 0.89 +1.3 823,958 + GFF1950 0.89 -0.6 823,958 + GFF1950 0.89 +0.4 823,959 - GFF1950 0.89 -0.5 823,959 - GFF1950 0.89 -0.4 824,113 + +0.3 824,113 + +0.2 824,113 + +1.0 824,113 + -2.2 824,113 + -0.7 824,114 - +0.3 824,114 - -0.4 824,114 - -0.6 824,114 - -0.6 824,114 - -0.3 824,114 - -0.6 824,114 - -0.7 824,114 - -0.3 824,114 - +0.3 824,134 + GFF1951 0.11 +0.2 824,170 + GFF1951 0.15 -0.1 824,170 + GFF1951 0.15 +0.5 824,170 + GFF1951 0.15 +0.8 824,259 + GFF1951 0.25 -0.2 824,259 + GFF1951 0.25 +0.0 824,259 + GFF1951 0.25 -1.1 824,259 + GFF1951 0.25 -0.5 824,260 - GFF1951 0.25 -1.0 824,260 - GFF1951 0.25 -0.4 824,260 - GFF1951 0.25 -1.0 824,260 - GFF1951 0.25 -0.5 824,260 - GFF1951 0.25 -0.3
Or see this region's nucleotide sequence