Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1827 and GFF1828 are separated by 8 nucleotides GFF1828 and GFF1829 overlap by 4 nucleotides GFF1829 and GFF1830 overlap by 4 nucleotides
GFF1827 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 692,008 to 693,480
GFF1827
GFF1828 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 693,489 to 694,262
GFF1828
GFF1829 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 694,259 to 694,909
GFF1829
GFF1830 - Homoprotocatechuate degradative operon repressor, at 694,906 to 695,397
GFF1830
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 692.489 kb on + strand, within GFF1827 at 692.489 kb on + strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.490 kb on - strand, within GFF1827 at 692.613 kb on - strand, within GFF1827 at 692.613 kb on - strand, within GFF1827 at 693.090 kb on - strand, within GFF1827 at 693.113 kb on + strand, within GFF1827 at 693.114 kb on - strand, within GFF1827 at 693.152 kb on + strand, within GFF1827 at 693.152 kb on + strand, within GFF1827 at 693.152 kb on + strand, within GFF1827 at 693.153 kb on - strand, within GFF1827 at 693.153 kb on - strand, within GFF1827 at 693.153 kb on - strand, within GFF1827 at 693.637 kb on + strand, within GFF1828 at 693.637 kb on + strand, within GFF1828 at 693.637 kb on + strand, within GFF1828 at 693.638 kb on - strand, within GFF1828 at 693.866 kb on - strand, within GFF1828 at 693.946 kb on + strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 693.947 kb on - strand, within GFF1828 at 694.075 kb on + strand, within GFF1828 at 694.076 kb on - strand, within GFF1828 at 694.615 kb on - strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on + strand, within GFF1829 at 694.617 kb on - strand, within GFF1829 at 694.618 kb on - strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.776 kb on + strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.777 kb on - strand, within GFF1829 at 694.806 kb on + strand, within GFF1829 at 694.806 kb on + strand, within GFF1829 at 694.806 kb on + strand, within GFF1829 at 694.872 kb on + strand at 694.989 kb on - strand, within GFF1830 at 694.989 kb on - strand, within GFF1830 at 694.989 kb on - strand, within GFF1830 at 695.036 kb on + strand, within GFF1830 at 695.036 kb on + strand, within GFF1830
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 692,489 + GFF1827 0.33 +0.4 692,489 + GFF1827 0.33 +1.4 692,490 - GFF1827 0.33 -0.5 692,490 - GFF1827 0.33 +0.4 692,490 - GFF1827 0.33 +0.9 692,490 - GFF1827 0.33 -0.7 692,613 - GFF1827 0.41 -0.2 692,613 - GFF1827 0.41 +2.1 693,090 - GFF1827 0.73 -0.4 693,113 + GFF1827 0.75 -2.3 693,114 - GFF1827 0.75 +0.1 693,152 + GFF1827 0.78 +0.2 693,152 + GFF1827 0.78 +0.3 693,152 + GFF1827 0.78 +0.3 693,153 - GFF1827 0.78 -0.0 693,153 - GFF1827 0.78 +0.0 693,153 - GFF1827 0.78 -0.2 693,637 + GFF1828 0.19 -0.3 693,637 + GFF1828 0.19 +0.0 693,637 + GFF1828 0.19 -0.5 693,638 - GFF1828 0.19 -0.2 693,866 - GFF1828 0.49 +0.4 693,946 + GFF1828 0.59 -0.6 693,947 - GFF1828 0.59 +0.7 693,947 - GFF1828 0.59 +1.0 693,947 - GFF1828 0.59 -0.1 693,947 - GFF1828 0.59 +0.2 694,075 + GFF1828 0.76 -0.1 694,076 - GFF1828 0.76 +0.1 694,615 - GFF1829 0.55 -0.3 694,617 + GFF1829 0.55 -0.2 694,617 + GFF1829 0.55 -0.7 694,617 + GFF1829 0.55 +0.2 694,617 + GFF1829 0.55 +0.2 694,617 - GFF1829 0.55 +0.2 694,618 - GFF1829 0.55 -0.6 694,776 + GFF1829 0.79 +0.6 694,776 + GFF1829 0.79 +0.2 694,776 + GFF1829 0.79 +0.3 694,776 + GFF1829 0.79 +0.6 694,777 - GFF1829 0.80 +0.0 694,777 - GFF1829 0.80 +0.3 694,777 - GFF1829 0.80 -0.0 694,777 - GFF1829 0.80 +0.1 694,777 - GFF1829 0.80 -0.2 694,806 + GFF1829 0.84 -0.2 694,806 + GFF1829 0.84 +0.3 694,806 + GFF1829 0.84 +0.0 694,872 + -1.1 694,989 - GFF1830 0.17 +0.1 694,989 - GFF1830 0.17 -0.3 694,989 - GFF1830 0.17 -0.6 695,036 + GFF1830 0.26 -0.9 695,036 + GFF1830 0.26 -0.1
Or see this region's nucleotide sequence