Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1752 and GFF1753 are separated by 4 nucleotides GFF1753 and GFF1754 are separated by 20 nucleotides GFF1754 and GFF1755 are separated by 15 nucleotides GFF1755 and GFF1756 overlap by 4 nucleotides
GFF1752 - Valine--pyruvate aminotransferase (EC 2.6.1.66), at 615,792 to 617,012
GFF1752
GFF1753 - Uncharacterized glutathione S-transferase-like protein, at 617,017 to 617,631
GFF1753
GFF1754 - Phenazine biosynthesis protein PhzF like, at 617,652 to 618,506
GFF1754
GFF1755 - FIG00454405: hypothetical protein, at 618,522 to 619,217
GFF1755
GFF1756 - Threonine dehydratase (EC 4.3.1.19), at 619,214 to 620,182
GFF1756
Position (kb) 617
618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 616.707 kb on + strand, within GFF1752 at 616.707 kb on + strand, within GFF1752 at 616.707 kb on + strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.708 kb on - strand, within GFF1752 at 616.893 kb on + strand at 616.893 kb on + strand at 617.147 kb on - strand, within GFF1753 at 617.230 kb on + strand, within GFF1753 at 617.230 kb on + strand, within GFF1753 at 617.257 kb on + strand, within GFF1753 at 617.257 kb on + strand, within GFF1753 at 617.257 kb on + strand, within GFF1753 at 617.258 kb on - strand, within GFF1753 at 617.258 kb on - strand, within GFF1753 at 617.258 kb on - strand, within GFF1753 at 617.573 kb on - strand at 617.573 kb on - strand at 617.573 kb on - strand at 617.573 kb on - strand at 617.573 kb on - strand at 617.844 kb on + strand, within GFF1754 at 618.381 kb on + strand, within GFF1754 at 618.381 kb on + strand, within GFF1754 at 618.381 kb on + strand, within GFF1754 at 618.382 kb on - strand, within GFF1754 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.699 kb on + strand, within GFF1755 at 618.700 kb on - strand, within GFF1755 at 619.269 kb on - strand at 619.269 kb on - strand at 619.397 kb on + strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756 at 619.398 kb on - strand, within GFF1756
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 616,707 + GFF1752 0.75 -0.3 616,707 + GFF1752 0.75 +0.2 616,707 + GFF1752 0.75 -0.3 616,708 - GFF1752 0.75 -0.9 616,708 - GFF1752 0.75 +0.2 616,708 - GFF1752 0.75 -0.2 616,708 - GFF1752 0.75 +1.2 616,708 - GFF1752 0.75 -0.2 616,708 - GFF1752 0.75 +0.1 616,708 - GFF1752 0.75 +0.3 616,708 - GFF1752 0.75 -1.0 616,708 - GFF1752 0.75 +0.3 616,893 + -0.5 616,893 + +0.2 617,147 - GFF1753 0.21 +0.7 617,230 + GFF1753 0.35 +0.3 617,230 + GFF1753 0.35 +1.8 617,257 + GFF1753 0.39 +0.1 617,257 + GFF1753 0.39 +0.2 617,257 + GFF1753 0.39 +0.1 617,258 - GFF1753 0.39 -0.3 617,258 - GFF1753 0.39 -0.3 617,258 - GFF1753 0.39 -1.0 617,573 - +0.0 617,573 - -0.0 617,573 - -1.0 617,573 - +0.2 617,573 - +0.0 617,844 + GFF1754 0.22 -0.5 618,381 + GFF1754 0.85 -0.4 618,381 + GFF1754 0.85 +0.3 618,381 + GFF1754 0.85 -0.2 618,382 - GFF1754 0.85 -0.3 618,699 + GFF1755 0.25 -0.3 618,699 + GFF1755 0.25 +0.3 618,699 + GFF1755 0.25 +0.2 618,699 + GFF1755 0.25 -0.8 618,699 + GFF1755 0.25 +0.2 618,700 - GFF1755 0.26 +0.1 619,269 - +0.6 619,269 - -0.0 619,397 + GFF1756 0.19 +0.0 619,398 - GFF1756 0.19 +0.0 619,398 - GFF1756 0.19 +0.2 619,398 - GFF1756 0.19 -0.4 619,398 - GFF1756 0.19 +0.8 619,398 - GFF1756 0.19 -2.1 619,398 - GFF1756 0.19 -0.1
Or see this region's nucleotide sequence