Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1744

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1742 and GFF1743 are separated by 14 nucleotidesGFF1743 and GFF1744 are separated by 109 nucleotidesGFF1744 and GFF1745 are separated by 182 nucleotides GFF1742 - Phenylalanine-4-hydroxylase (EC 1.14.16.1), at 597,198 to 598,052 GFF1742 GFF1743 - hypothetical protein, at 598,067 to 598,912 GFF1743 GFF1744 - hypothetical protein, at 599,022 to 599,762 GFF1744 GFF1745 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 599,945 to 601,573 GFF1745 Position (kb) 599 600Strain fitness (log2 ratio) -2 -1 0 1 2at 598.152 kb on + strand, within GFF1743at 598.152 kb on + strand, within GFF1743at 598.152 kb on + strand, within GFF1743at 598.152 kb on + strand, within GFF1743at 598.153 kb on - strand, within GFF1743at 598.153 kb on - strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.173 kb on + strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.174 kb on - strand, within GFF1743at 598.318 kb on + strand, within GFF1743at 598.318 kb on + strand, within GFF1743at 598.318 kb on + strand, within GFF1743at 598.318 kb on + strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.319 kb on - strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.452 kb on + strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.453 kb on - strand, within GFF1743at 598.497 kb on + strand, within GFF1743at 598.497 kb on + strand, within GFF1743at 598.498 kb on - strand, within GFF1743at 598.782 kb on + strand, within GFF1743at 598.783 kb on - strand, within GFF1743at 598.783 kb on - strand, within GFF1743at 598.783 kb on - strand, within GFF1743at 598.783 kb on - strand, within GFF1743at 598.884 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.963 kb on + strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.964 kb on - strandat 598.986 kb on - strandat 598.989 kb on + strandat 599.166 kb on + strand, within GFF1744at 599.166 kb on + strand, within GFF1744at 599.166 kb on + strand, within GFF1744at 599.166 kb on + strand, within GFF1744at 599.166 kb on + strand, within GFF1744at 599.166 kb on + strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.167 kb on - strand, within GFF1744at 599.193 kb on + strand, within GFF1744at 599.193 kb on + strand, within GFF1744at 599.194 kb on - strand, within GFF1744at 599.229 kb on + strand, within GFF1744at 599.229 kb on + strand, within GFF1744at 599.422 kb on - strand, within GFF1744at 599.422 kb on - strand, within GFF1744at 599.800 kb on + strandat 599.800 kb on + strandat 599.801 kb on - strandat 599.897 kb on + strandat 599.898 kb on - strandat 599.936 kb on + strandat 599.936 kb on + strandat 599.936 kb on + strandat 599.936 kb on + strandat 599.937 kb on - strandat 599.937 kb on - strandat 600.023 kb on + strandat 600.024 kb on - strandat 600.165 kb on - strand, within GFF1745at 600.191 kb on + strand, within GFF1745at 600.191 kb on + strand, within GFF1745at 600.191 kb on + strand, within GFF1745at 600.192 kb on - strand, within GFF1745at 600.192 kb on - strand, within GFF1745at 600.192 kb on - strand, within GFF1745at 600.192 kb on - strand, within GFF1745at 600.192 kb on - strand, within GFF1745at 600.192 kb on - strand, within GFF1745at 600.401 kb on + strand, within GFF1745at 600.530 kb on + strand, within GFF1745at 600.530 kb on + strand, within GFF1745at 600.530 kb on + strand, within GFF1745at 600.530 kb on + strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.531 kb on - strand, within GFF1745at 600.683 kb on + strand, within GFF1745at 600.683 kb on + strand, within GFF1745at 600.683 kb on + strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745at 600.684 kb on - strand, within GFF1745

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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598,152 + GFF1743 0.10 -0.1
598,152 + GFF1743 0.10 +0.6
598,152 + GFF1743 0.10 -0.1
598,152 + GFF1743 0.10 +0.6
598,153 - GFF1743 0.10 -0.4
598,153 - GFF1743 0.10 -1.1
598,173 + GFF1743 0.13 +1.6
598,173 + GFF1743 0.13 -1.7
598,173 + GFF1743 0.13 +2.3
598,173 + GFF1743 0.13 -0.2
598,173 + GFF1743 0.13 +0.7
598,173 + GFF1743 0.13 +0.5
598,173 + GFF1743 0.13 +1.3
598,173 + GFF1743 0.13 +0.1
598,173 + GFF1743 0.13 -0.6
598,173 + GFF1743 0.13 +0.8
598,173 + GFF1743 0.13 -0.1
598,173 + GFF1743 0.13 -0.3
598,173 + GFF1743 0.13 +0.1
598,173 + GFF1743 0.13 -0.4
598,173 + GFF1743 0.13 -0.0
598,173 + GFF1743 0.13 -0.0
598,173 + GFF1743 0.13 -0.3
598,173 + GFF1743 0.13 +1.0
598,174 - GFF1743 0.13 +1.0
598,174 - GFF1743 0.13 -1.1
598,174 - GFF1743 0.13 -0.1
598,174 - GFF1743 0.13 +0.2
598,174 - GFF1743 0.13 +1.2
598,174 - GFF1743 0.13 +0.4
598,174 - GFF1743 0.13 +0.4
598,174 - GFF1743 0.13 +0.4
598,174 - GFF1743 0.13 -2.4
598,174 - GFF1743 0.13 +0.2
598,174 - GFF1743 0.13 +0.6
598,174 - GFF1743 0.13 +0.3
598,174 - GFF1743 0.13 +0.8
598,174 - GFF1743 0.13 +0.2
598,174 - GFF1743 0.13 -0.4
598,174 - GFF1743 0.13 -0.3
598,174 - GFF1743 0.13 +0.2
598,174 - GFF1743 0.13 -0.3
598,174 - GFF1743 0.13 -1.2
598,174 - GFF1743 0.13 +0.6
598,174 - GFF1743 0.13 +1.2
598,174 - GFF1743 0.13 -0.0
598,318 + GFF1743 0.30 +0.3
598,318 + GFF1743 0.30 -0.3
598,318 + GFF1743 0.30 +0.2
598,318 + GFF1743 0.30 +0.6
598,319 - GFF1743 0.30 -0.7
598,319 - GFF1743 0.30 -0.7
598,319 - GFF1743 0.30 -0.4
598,319 - GFF1743 0.30 -0.0
598,319 - GFF1743 0.30 -0.7
598,319 - GFF1743 0.30 +0.3
598,319 - GFF1743 0.30 -0.4
598,319 - GFF1743 0.30 -0.7
598,319 - GFF1743 0.30 +0.8
598,319 - GFF1743 0.30 +0.2
598,452 + GFF1743 0.46 +1.6
598,452 + GFF1743 0.46 +1.3
598,452 + GFF1743 0.46 -0.3
598,452 + GFF1743 0.46 -0.1
598,452 + GFF1743 0.46 +1.3
598,452 + GFF1743 0.46 -0.6
598,452 + GFF1743 0.46 -0.2
598,452 + GFF1743 0.46 +0.7
598,452 + GFF1743 0.46 +1.2
598,452 + GFF1743 0.46 +0.7
598,453 - GFF1743 0.46 -0.7
598,453 - GFF1743 0.46 -1.5
598,453 - GFF1743 0.46 -0.1
598,453 - GFF1743 0.46 -1.2
598,453 - GFF1743 0.46 -0.5
598,453 - GFF1743 0.46 +0.2
598,453 - GFF1743 0.46 -0.0
598,497 + GFF1743 0.51 +0.4
598,497 + GFF1743 0.51 -0.5
598,498 - GFF1743 0.51 -1.0
598,782 + GFF1743 0.85 -0.0
598,783 - GFF1743 0.85 -0.8
598,783 - GFF1743 0.85 -1.5
598,783 - GFF1743 0.85 -0.3
598,783 - GFF1743 0.85 -0.9
598,884 + +0.8
598,963 + +0.4
598,963 + +0.2
598,963 + -0.3
598,963 + -0.0
598,963 + +1.2
598,963 + -1.0
598,963 + -0.3
598,963 + -1.2
598,963 + -1.8
598,963 + +0.2
598,963 + +1.3
598,964 - +0.6
598,964 - +0.2
598,964 - -0.3
598,964 - -0.0
598,964 - +0.2
598,964 - -0.2
598,964 - -1.3
598,964 - -0.6
598,964 - -0.2
598,964 - -0.3
598,986 - -0.2
598,989 + -2.0
599,166 + GFF1744 0.19 -0.4
599,166 + GFF1744 0.19 -0.0
599,166 + GFF1744 0.19 +1.0
599,166 + GFF1744 0.19 +0.6
599,166 + GFF1744 0.19 -0.4
599,166 + GFF1744 0.19 +0.4
599,167 - GFF1744 0.20 -1.3
599,167 - GFF1744 0.20 -0.8
599,167 - GFF1744 0.20 -0.1
599,167 - GFF1744 0.20 +0.3
599,167 - GFF1744 0.20 -0.2
599,167 - GFF1744 0.20 -0.4
599,167 - GFF1744 0.20 -0.1
599,167 - GFF1744 0.20 -0.2
599,167 - GFF1744 0.20 +1.7
599,193 + GFF1744 0.23 +0.8
599,193 + GFF1744 0.23 +0.1
599,194 - GFF1744 0.23 -0.3
599,229 + GFF1744 0.28 +1.2
599,229 + GFF1744 0.28 +1.9
599,422 - GFF1744 0.54 -0.0
599,422 - GFF1744 0.54 +0.7
599,800 + +0.8
599,800 + -0.7
599,801 - +0.7
599,897 + +0.2
599,898 - +0.2
599,936 + -1.2
599,936 + -0.0
599,936 + +0.1
599,936 + +0.3
599,937 - -0.5
599,937 - -0.0
600,023 + -0.7
600,024 - +0.7
600,165 - GFF1745 0.14 -0.1
600,191 + GFF1745 0.15 -0.2
600,191 + GFF1745 0.15 +0.6
600,191 + GFF1745 0.15 +0.3
600,192 - GFF1745 0.15 +2.6
600,192 - GFF1745 0.15 +1.0
600,192 - GFF1745 0.15 -0.0
600,192 - GFF1745 0.15 +0.0
600,192 - GFF1745 0.15 +2.4
600,192 - GFF1745 0.15 +0.3
600,401 + GFF1745 0.28 +0.5
600,530 + GFF1745 0.36 +0.2
600,530 + GFF1745 0.36 -0.1
600,530 + GFF1745 0.36 +0.1
600,530 + GFF1745 0.36 +0.2
600,531 - GFF1745 0.36 +0.5
600,531 - GFF1745 0.36 -0.6
600,531 - GFF1745 0.36 +0.4
600,531 - GFF1745 0.36 +0.1
600,531 - GFF1745 0.36 -0.3
600,531 - GFF1745 0.36 +0.6
600,531 - GFF1745 0.36 +0.4
600,531 - GFF1745 0.36 +0.2
600,531 - GFF1745 0.36 -0.2
600,683 + GFF1745 0.45 -0.5
600,683 + GFF1745 0.45 +1.0
600,683 + GFF1745 0.45 +0.1
600,684 - GFF1745 0.45 +0.4
600,684 - GFF1745 0.45 +0.3
600,684 - GFF1745 0.45 +0.4
600,684 - GFF1745 0.45 -0.2
600,684 - GFF1745 0.45 -0.8
600,684 - GFF1745 0.45 +0.7
600,684 - GFF1745 0.45 +0.9
600,684 - GFF1745 0.45 +0.6
600,684 - GFF1745 0.45 +0.3
600,684 - GFF1745 0.45 +1.3
600,684 - GFF1745 0.45 +0.3

Or see this region's nucleotide sequence