Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1716

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1715 and GFF1716 are separated by 160 nucleotidesGFF1716 and GFF1717 are separated by 599 nucleotides GFF1715 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 570,463 to 572,085 GFF1715 GFF1716 - Transcriptional regulator, AraC family, at 572,246 to 573,247 GFF1716 GFF1717 - UPF0225 protein YchJ, at 573,847 to 574,233 GFF1717 Position (kb) 572 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 571.490 kb on + strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.491 kb on - strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.568 kb on + strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.569 kb on - strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.649 kb on + strand, within GFF1715at 571.650 kb on - strand, within GFF1715at 571.650 kb on - strand, within GFF1715at 571.650 kb on - strand, within GFF1715at 571.718 kb on + strand, within GFF1715at 571.719 kb on - strand, within GFF1715at 571.719 kb on - strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.721 kb on + strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.722 kb on - strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.841 kb on + strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 571.842 kb on - strand, within GFF1715at 572.125 kb on + strandat 572.125 kb on + strandat 572.126 kb on - strandat 572.126 kb on - strandat 572.126 kb on - strandat 572.126 kb on - strandat 572.167 kb on + strandat 572.167 kb on + strandat 572.210 kb on - strandat 572.258 kb on + strandat 572.259 kb on - strandat 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.441 kb on + strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.442 kb on - strand, within GFF1716at 572.663 kb on + strand, within GFF1716at 572.664 kb on - strand, within GFF1716at 572.664 kb on - strand, within GFF1716at 572.664 kb on - strand, within GFF1716at 572.732 kb on + strand, within GFF1716at 572.732 kb on + strand, within GFF1716at 572.802 kb on - strand, within GFF1716at 572.802 kb on - strand, within GFF1716at 572.883 kb on - strand, within GFF1716at 573.245 kb on + strandat 573.246 kb on - strandat 573.282 kb on + strandat 573.282 kb on + strandat 573.394 kb on - strandat 573.394 kb on - strandat 573.394 kb on - strandat 573.394 kb on - strandat 573.394 kb on - strandat 573.621 kb on + strandat 573.621 kb on + strandat 573.622 kb on - strandat 573.622 kb on - strandat 573.873 kb on - strandat 574.112 kb on + strand, within GFF1717at 574.112 kb on + strand, within GFF1717at 574.113 kb on - strand, within GFF1717at 574.113 kb on - strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.166 kb on + strand, within GFF1717at 574.167 kb on - strand, within GFF1717at 574.167 kb on - strand, within GFF1717at 574.167 kb on - strand, within GFF1717

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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571,490 + GFF1715 0.63 -1.3
571,491 - GFF1715 0.63 -1.1
571,491 - GFF1715 0.63 -0.6
571,491 - GFF1715 0.63 -0.8
571,491 - GFF1715 0.63 -2.2
571,491 - GFF1715 0.63 -0.3
571,491 - GFF1715 0.63 -0.9
571,568 + GFF1715 0.68 -1.2
571,568 + GFF1715 0.68 -1.5
571,568 + GFF1715 0.68 -0.1
571,568 + GFF1715 0.68 -1.0
571,568 + GFF1715 0.68 -0.7
571,568 + GFF1715 0.68 -1.5
571,568 + GFF1715 0.68 -1.0
571,568 + GFF1715 0.68 -2.7
571,568 + GFF1715 0.68 -1.1
571,569 - GFF1715 0.68 -0.9
571,569 - GFF1715 0.68 -0.1
571,569 - GFF1715 0.68 +0.3
571,569 - GFF1715 0.68 -0.4
571,649 + GFF1715 0.73 -1.1
571,649 + GFF1715 0.73 -0.1
571,649 + GFF1715 0.73 -1.1
571,649 + GFF1715 0.73 -0.8
571,650 - GFF1715 0.73 +0.4
571,650 - GFF1715 0.73 -1.1
571,650 - GFF1715 0.73 -1.0
571,718 + GFF1715 0.77 +0.1
571,719 - GFF1715 0.77 -1.6
571,719 - GFF1715 0.77 -0.5
571,721 + GFF1715 0.78 -0.7
571,721 + GFF1715 0.78 -0.4
571,721 + GFF1715 0.78 -0.7
571,721 + GFF1715 0.78 -1.1
571,721 + GFF1715 0.78 -1.6
571,721 + GFF1715 0.78 +0.2
571,721 + GFF1715 0.78 -0.6
571,722 - GFF1715 0.78 -1.0
571,722 - GFF1715 0.78 -0.9
571,722 - GFF1715 0.78 -0.9
571,722 - GFF1715 0.78 -1.5
571,722 - GFF1715 0.78 -0.9
571,722 - GFF1715 0.78 +0.1
571,722 - GFF1715 0.78 -0.4
571,722 - GFF1715 0.78 +0.9
571,841 + GFF1715 0.85 -1.6
571,841 + GFF1715 0.85 -1.0
571,841 + GFF1715 0.85 +0.2
571,841 + GFF1715 0.85 +0.1
571,842 - GFF1715 0.85 -0.3
571,842 - GFF1715 0.85 +0.2
571,842 - GFF1715 0.85 -1.1
571,842 - GFF1715 0.85 -0.6
571,842 - GFF1715 0.85 -2.9
572,125 + -0.3
572,125 + -0.1
572,126 - +0.2
572,126 - -0.5
572,126 - -1.2
572,126 - +0.0
572,167 + -1.0
572,167 + -0.2
572,210 - -0.5
572,258 + -1.6
572,259 - -0.2
572,441 + GFF1716 0.19 -2.9
572,441 + GFF1716 0.19 +0.6
572,441 + GFF1716 0.19 -0.0
572,441 + GFF1716 0.19 -0.7
572,441 + GFF1716 0.19 +0.9
572,441 + GFF1716 0.19 -0.6
572,442 - GFF1716 0.20 -1.4
572,442 - GFF1716 0.20 +1.4
572,442 - GFF1716 0.20 -0.8
572,442 - GFF1716 0.20 -0.4
572,442 - GFF1716 0.20 -0.0
572,663 + GFF1716 0.42 -0.8
572,664 - GFF1716 0.42 -1.5
572,664 - GFF1716 0.42 -0.5
572,664 - GFF1716 0.42 -0.9
572,732 + GFF1716 0.49 -0.9
572,732 + GFF1716 0.49 -1.2
572,802 - GFF1716 0.55 -0.9
572,802 - GFF1716 0.55 -1.2
572,883 - GFF1716 0.64 -1.2
573,245 + +0.0
573,246 - +0.6
573,282 + +0.4
573,282 + +1.2
573,394 - -0.1
573,394 - -0.1
573,394 - +0.6
573,394 - +0.6
573,394 - -0.6
573,621 + -1.0
573,621 + +2.0
573,622 - -0.4
573,622 - -0.5
573,873 - +0.8
574,112 + GFF1717 0.68 +0.3
574,112 + GFF1717 0.68 -0.1
574,113 - GFF1717 0.69 +0.4
574,113 - GFF1717 0.69 +0.2
574,166 + GFF1717 0.82 +1.1
574,166 + GFF1717 0.82 -0.8
574,166 + GFF1717 0.82 -0.7
574,166 + GFF1717 0.82 +0.7
574,167 - GFF1717 0.83 +1.1
574,167 - GFF1717 0.83 +0.5
574,167 - GFF1717 0.83 -0.9

Or see this region's nucleotide sequence