Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1587 and GFF1588 overlap by 1 nucleotides GFF1588 and GFF1589 are separated by 35 nucleotides GFF1589 and GFF1590 are separated by 172 nucleotides
GFF1587 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 442,828 to 443,121
GFF1587
GFF1588 - hypothetical protein, at 443,121 to 443,978
GFF1588
GFF1589 - (Y14336) putative extracellular protein containing predicted 35aa signal peptide, at 444,014 to 444,988
GFF1589
GFF1590 - Transcriptional regulator, AraC family, at 445,161 to 446,120
GFF1590
Position (kb) 444
445 Strain fitness (log2 ratio) -1
0
1 at 443.227 kb on + strand, within GFF1588 at 443.227 kb on + strand, within GFF1588 at 443.228 kb on - strand, within GFF1588 at 443.228 kb on - strand, within GFF1588 at 443.470 kb on + strand, within GFF1588 at 443.471 kb on - strand, within GFF1588 at 443.567 kb on - strand, within GFF1588 at 443.588 kb on - strand, within GFF1588 at 443.588 kb on - strand, within GFF1588 at 443.588 kb on - strand, within GFF1588 at 443.603 kb on - strand, within GFF1588 at 443.677 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.866 kb on + strand, within GFF1588 at 443.867 kb on - strand, within GFF1588 at 443.867 kb on - strand, within GFF1588 at 443.867 kb on - strand, within GFF1588 at 443.893 kb on + strand at 443.894 kb on - strand at 443.894 kb on - strand at 444.307 kb on - strand, within GFF1589 at 444.468 kb on + strand, within GFF1589 at 444.469 kb on - strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 444.531 kb on + strand, within GFF1589 at 445.057 kb on + strand at 445.065 kb on - strand at 445.086 kb on - strand at 445.183 kb on + strand at 445.246 kb on + strand at 445.331 kb on - strand, within GFF1590 at 445.331 kb on - strand, within GFF1590
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 443,227 + GFF1588 0.12 -0.2 443,227 + GFF1588 0.12 -0.2 443,228 - GFF1588 0.12 -0.2 443,228 - GFF1588 0.12 +0.2 443,470 + GFF1588 0.41 +0.4 443,471 - GFF1588 0.41 -0.2 443,567 - GFF1588 0.52 +0.2 443,588 - GFF1588 0.54 +0.7 443,588 - GFF1588 0.54 -0.3 443,588 - GFF1588 0.54 +0.4 443,603 - GFF1588 0.56 -0.0 443,677 + GFF1588 0.65 -0.0 443,866 + GFF1588 0.87 +0.7 443,866 + GFF1588 0.87 -0.0 443,866 + GFF1588 0.87 +0.8 443,866 + GFF1588 0.87 +0.5 443,866 + GFF1588 0.87 +0.5 443,866 + GFF1588 0.87 +0.0 443,867 - GFF1588 0.87 -0.3 443,867 - GFF1588 0.87 -0.1 443,867 - GFF1588 0.87 +0.2 443,893 + -0.2 443,894 - -0.1 443,894 - +0.1 444,307 - GFF1589 0.30 +0.2 444,468 + GFF1589 0.47 +0.0 444,469 - GFF1589 0.47 +0.7 444,531 + GFF1589 0.53 -0.0 444,531 + GFF1589 0.53 -0.4 444,531 + GFF1589 0.53 +0.7 445,057 + +0.3 445,065 - -0.0 445,086 - -0.2 445,183 + -0.2 445,246 + -1.0 445,331 - GFF1590 0.18 +0.4 445,331 - GFF1590 0.18 +0.4
Or see this region's nucleotide sequence