Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1581 and GFF1582 are separated by 135 nucleotides GFF1582 and GFF1583 are separated by 79 nucleotides
GFF1581 - hypothetical protein, at 435,847 to 437,343
GFF1581
GFF1582 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 437,479 to 439,131
GFF1582
GFF1583 - Nodulation protein D (transcriptional regulator, LysR family), at 439,211 to 440,122
GFF1583
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -2
-1
0
1 at 436.496 kb on + strand, within GFF1581 at 436.717 kb on + strand, within GFF1581 at 436.718 kb on + strand, within GFF1581 at 436.719 kb on - strand, within GFF1581 at 436.719 kb on - strand, within GFF1581 at 436.748 kb on + strand, within GFF1581 at 436.749 kb on - strand, within GFF1581 at 436.749 kb on - strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.928 kb on + strand, within GFF1581 at 436.929 kb on - strand, within GFF1581 at 436.929 kb on - strand, within GFF1581 at 436.986 kb on - strand, within GFF1581 at 437.455 kb on + strand at 437.455 kb on + strand at 437.456 kb on - strand at 437.500 kb on + strand at 437.501 kb on - strand at 437.593 kb on + strand at 437.620 kb on + strand at 437.956 kb on + strand, within GFF1582 at 437.957 kb on - strand, within GFF1582 at 438.004 kb on + strand, within GFF1582 at 438.004 kb on + strand, within GFF1582 at 439.212 kb on + strand at 439.285 kb on - strand at 439.420 kb on - strand, within GFF1583 at 439.717 kb on - strand, within GFF1583 at 439.717 kb on - strand, within GFF1583 at 439.806 kb on + strand, within GFF1583
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 436,496 + GFF1581 0.43 +0.3 436,717 + GFF1581 0.58 +0.6 436,718 + GFF1581 0.58 +1.4 436,719 - GFF1581 0.58 -0.0 436,719 - GFF1581 0.58 +0.2 436,748 + GFF1581 0.60 -0.7 436,749 - GFF1581 0.60 -0.4 436,749 - GFF1581 0.60 +0.5 436,928 + GFF1581 0.72 -0.5 436,928 + GFF1581 0.72 +0.0 436,928 + GFF1581 0.72 +0.7 436,929 - GFF1581 0.72 -0.8 436,929 - GFF1581 0.72 -0.0 436,986 - GFF1581 0.76 +1.0 437,455 + +0.0 437,455 + +0.0 437,456 - -0.3 437,500 + +0.3 437,501 - +1.4 437,593 + -0.8 437,620 + +0.3 437,956 + GFF1582 0.29 -0.4 437,957 - GFF1582 0.29 +0.4 438,004 + GFF1582 0.32 +0.7 438,004 + GFF1582 0.32 -2.4 439,212 + +0.2 439,285 - -0.3 439,420 - GFF1583 0.23 -0.8 439,717 - GFF1583 0.55 -0.9 439,717 - GFF1583 0.55 +0.4 439,806 + GFF1583 0.65 +0.2
Or see this region's nucleotide sequence