Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1436 and GFF1437 are separated by 15 nucleotides GFF1437 and GFF1438 are separated by 159 nucleotides GFF1438 and GFF1439 are separated by 66 nucleotides
GFF1436 - Flagellar motor rotation protein MotB, at 291,722 to 292,795
GFF1436
GFF1437 - Flagellar motor rotation protein MotA, at 292,811 to 293,668
GFF1437
GFF1438 - Flagellar transcriptional activator FlhC, at 293,828 to 294,364
GFF1438
GFF1439 - Flagellar transcriptional activator FlhD, at 294,431 to 294,766
GFF1439
Position (kb) 292
293
294 Strain fitness (log2 ratio) -2
-1
0
1 at 292.156 kb on - strand, within GFF1436 at 292.245 kb on + strand, within GFF1436 at 292.246 kb on - strand, within GFF1436 at 292.246 kb on - strand, within GFF1436 at 292.608 kb on + strand, within GFF1436 at 292.609 kb on - strand, within GFF1436 at 292.908 kb on + strand, within GFF1437 at 292.909 kb on - strand, within GFF1437 at 293.014 kb on - strand, within GFF1437 at 293.014 kb on - strand, within GFF1437 at 293.039 kb on - strand, within GFF1437 at 293.326 kb on - strand, within GFF1437 at 293.417 kb on + strand, within GFF1437 at 293.418 kb on - strand, within GFF1437 at 293.455 kb on - strand, within GFF1437 at 293.612 kb on + strand at 293.612 kb on + strand at 293.612 kb on + strand at 293.612 kb on + strand at 293.613 kb on - strand at 293.619 kb on - strand at 293.733 kb on + strand at 293.746 kb on + strand at 293.746 kb on + strand at 293.747 kb on - strand at 294.057 kb on + strand, within GFF1438 at 294.058 kb on - strand, within GFF1438 at 294.117 kb on + strand, within GFF1438 at 294.118 kb on - strand, within GFF1438 at 294.231 kb on + strand, within GFF1438 at 294.231 kb on + strand, within GFF1438 at 294.232 kb on - strand, within GFF1438 at 294.232 kb on - strand, within GFF1438 at 294.252 kb on + strand, within GFF1438 at 294.252 kb on + strand, within GFF1438 at 294.253 kb on - strand, within GFF1438 at 294.253 kb on - strand, within GFF1438 at 294.270 kb on + strand, within GFF1438 at 294.271 kb on - strand, within GFF1438 at 294.666 kb on + strand, within GFF1439
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 292,156 - GFF1436 0.40 -0.4 292,245 + GFF1436 0.49 +0.2 292,246 - GFF1436 0.49 +0.6 292,246 - GFF1436 0.49 +0.2 292,608 + GFF1436 0.82 +0.2 292,609 - GFF1436 0.83 +0.3 292,908 + GFF1437 0.11 +0.5 292,909 - GFF1437 0.11 -0.4 293,014 - GFF1437 0.24 -0.2 293,014 - GFF1437 0.24 +0.1 293,039 - GFF1437 0.27 +0.6 293,326 - GFF1437 0.60 +0.1 293,417 + GFF1437 0.71 -1.1 293,418 - GFF1437 0.71 +0.1 293,455 - GFF1437 0.75 -0.1 293,612 + +0.3 293,612 + -0.3 293,612 + +0.8 293,612 + +1.4 293,613 - +0.3 293,619 - -1.9 293,733 + -0.1 293,746 + -0.1 293,746 + +0.3 293,747 - -1.2 294,057 + GFF1438 0.43 -0.2 294,058 - GFF1438 0.43 +0.2 294,117 + GFF1438 0.54 -0.2 294,118 - GFF1438 0.54 +0.4 294,231 + GFF1438 0.75 +0.1 294,231 + GFF1438 0.75 +1.0 294,232 - GFF1438 0.75 +0.7 294,232 - GFF1438 0.75 -0.4 294,252 + GFF1438 0.79 +0.2 294,252 + GFF1438 0.79 +0.4 294,253 - GFF1438 0.79 +0.9 294,253 - GFF1438 0.79 -0.3 294,270 + GFF1438 0.82 -0.8 294,271 - GFF1438 0.82 +1.7 294,666 + GFF1439 0.70 +0.4
Or see this region's nucleotide sequence