Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1368 and GFF1369 overlap by 4 nucleotides GFF1369 and GFF1370 overlap by 1 nucleotides
GFF1368 - Putative gluthatione transporter,solute-binding component, at 223,834 to 225,420
GFF1368
GFF1369 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 225,417 to 226,700
GFF1369
GFF1370 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 226,700 to 227,680
GFF1370
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 224.507 kb on + strand, within GFF1368 at 224.507 kb on + strand, within GFF1368 at 224.564 kb on + strand, within GFF1368 at 224.750 kb on + strand, within GFF1368 at 224.750 kb on + strand, within GFF1368 at 224.750 kb on + strand, within GFF1368 at 224.751 kb on - strand, within GFF1368 at 224.789 kb on + strand, within GFF1368 at 224.789 kb on + strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 224.790 kb on - strand, within GFF1368 at 225.056 kb on + strand, within GFF1368 at 225.056 kb on + strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.057 kb on - strand, within GFF1368 at 225.254 kb on + strand, within GFF1368 at 225.254 kb on + strand, within GFF1368 at 225.255 kb on - strand, within GFF1368 at 225.559 kb on + strand, within GFF1369 at 225.560 kb on - strand, within GFF1369 at 225.623 kb on - strand, within GFF1369 at 225.773 kb on - strand, within GFF1369 at 225.784 kb on + strand, within GFF1369 at 225.784 kb on + strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 225.785 kb on - strand, within GFF1369 at 226.315 kb on + strand, within GFF1369 at 226.315 kb on + strand, within GFF1369 at 226.316 kb on - strand, within GFF1369 at 226.573 kb on + strand at 226.573 kb on + strand at 226.573 kb on + strand at 226.574 kb on - strand at 226.574 kb on - strand at 226.749 kb on + strand at 226.750 kb on - strand at 226.750 kb on - strand at 226.750 kb on - strand at 226.774 kb on + strand at 226.775 kb on - strand at 226.775 kb on - strand at 226.775 kb on - strand at 226.806 kb on + strand, within GFF1370 at 226.806 kb on + strand, within GFF1370 at 226.806 kb on + strand, within GFF1370 at 226.806 kb on + strand, within GFF1370 at 226.806 kb on + strand, within GFF1370 at 226.807 kb on - strand, within GFF1370 at 226.807 kb on - strand, within GFF1370 at 227.025 kb on + strand, within GFF1370 at 227.025 kb on + strand, within GFF1370 at 227.025 kb on + strand, within GFF1370 at 227.025 kb on + strand, within GFF1370 at 227.026 kb on - strand, within GFF1370 at 227.026 kb on - strand, within GFF1370 at 227.026 kb on - strand, within GFF1370 at 227.238 kb on - strand, within GFF1370 at 227.328 kb on + strand, within GFF1370 at 227.328 kb on + strand, within GFF1370 at 227.328 kb on - strand, within GFF1370 at 227.329 kb on - strand, within GFF1370 at 227.329 kb on - strand, within GFF1370 at 227.411 kb on + strand, within GFF1370 at 227.411 kb on + strand, within GFF1370 at 227.595 kb on + strand at 227.595 kb on + strand at 227.595 kb on + strand at 227.596 kb on - strand at 227.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 224,507 + GFF1368 0.42 -0.1 224,507 + GFF1368 0.42 +0.2 224,564 + GFF1368 0.46 -0.3 224,750 + GFF1368 0.58 -0.5 224,750 + GFF1368 0.58 -0.9 224,750 + GFF1368 0.58 -0.5 224,751 - GFF1368 0.58 +0.0 224,789 + GFF1368 0.60 -0.8 224,789 + GFF1368 0.60 +0.2 224,790 - GFF1368 0.60 -0.5 224,790 - GFF1368 0.60 +0.1 224,790 - GFF1368 0.60 +0.4 224,790 - GFF1368 0.60 -0.2 224,790 - GFF1368 0.60 -0.8 225,056 + GFF1368 0.77 -1.2 225,056 + GFF1368 0.77 -1.2 225,057 - GFF1368 0.77 -2.2 225,057 - GFF1368 0.77 +0.1 225,057 - GFF1368 0.77 -0.4 225,057 - GFF1368 0.77 -0.3 225,057 - GFF1368 0.77 -0.2 225,254 + GFF1368 0.89 -1.0 225,254 + GFF1368 0.89 +0.6 225,255 - GFF1368 0.90 +0.5 225,559 + GFF1369 0.11 -1.2 225,560 - GFF1369 0.11 -0.8 225,623 - GFF1369 0.16 -0.4 225,773 - GFF1369 0.28 -1.0 225,784 + GFF1369 0.29 +0.2 225,784 + GFF1369 0.29 +0.4 225,785 - GFF1369 0.29 +0.2 225,785 - GFF1369 0.29 +0.2 225,785 - GFF1369 0.29 +1.9 225,785 - GFF1369 0.29 +0.1 226,315 + GFF1369 0.70 +0.1 226,315 + GFF1369 0.70 -0.7 226,316 - GFF1369 0.70 +0.3 226,573 + +0.4 226,573 + -0.1 226,573 + +0.4 226,574 - -0.2 226,574 - -0.8 226,749 + +0.8 226,750 - -0.5 226,750 - -0.6 226,750 - -0.5 226,774 + +1.1 226,775 - -0.2 226,775 - -0.1 226,775 - -0.2 226,806 + GFF1370 0.11 -0.2 226,806 + GFF1370 0.11 -0.6 226,806 + GFF1370 0.11 -1.4 226,806 + GFF1370 0.11 -0.8 226,806 + GFF1370 0.11 +0.2 226,807 - GFF1370 0.11 -0.9 226,807 - GFF1370 0.11 -0.5 227,025 + GFF1370 0.33 -0.0 227,025 + GFF1370 0.33 +1.2 227,025 + GFF1370 0.33 +0.1 227,025 + GFF1370 0.33 +0.0 227,026 - GFF1370 0.33 -0.3 227,026 - GFF1370 0.33 -0.2 227,026 - GFF1370 0.33 -0.4 227,238 - GFF1370 0.55 -0.4 227,328 + GFF1370 0.64 -0.3 227,328 + GFF1370 0.64 -0.8 227,328 - GFF1370 0.64 -0.8 227,329 - GFF1370 0.64 -0.1 227,329 - GFF1370 0.64 +0.3 227,411 + GFF1370 0.72 -0.2 227,411 + GFF1370 0.72 -1.9 227,595 + -0.1 227,595 + -0.4 227,595 + -0.2 227,596 - +0.2 227,596 - -0.3
Or see this region's nucleotide sequence