Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1365

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1363 and GFF1364 are separated by 70 nucleotidesGFF1364 and GFF1365 are separated by 34 nucleotidesGFF1365 and GFF1366 overlap by 4 nucleotidesGFF1366 and GFF1367 are separated by 7 nucleotides GFF1363 - Transaldolase (EC 2.2.1.2), at 218,907 to 219,848 GFF1363 GFF1364 - Phosphogluconate repressor HexR, RpiR family, at 219,919 to 220,767 GFF1364 GFF1365 - Putative glutathione transporter, ATP-binding component, at 220,802 to 221,878 GFF1365 GFF1366 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 221,875 to 222,849 GFF1366 GFF1367 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 222,857 to 223,768 GFF1367 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.857 kb on + strandat 219.857 kb on + strandat 219.858 kb on - strandat 219.905 kb on + strandat 219.906 kb on - strandat 220.237 kb on + strand, within GFF1364at 220.238 kb on - strand, within GFF1364at 220.238 kb on - strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.297 kb on + strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.298 kb on - strand, within GFF1364at 220.324 kb on + strand, within GFF1364at 220.324 kb on + strand, within GFF1364at 220.325 kb on - strand, within GFF1364at 220.325 kb on - strand, within GFF1364at 220.403 kb on - strand, within GFF1364at 220.403 kb on - strand, within GFF1364at 220.616 kb on - strand, within GFF1364at 220.730 kb on - strandat 220.759 kb on + strandat 220.760 kb on - strandat 220.803 kb on + strandat 220.803 kb on + strandat 220.804 kb on - strandat 221.023 kb on + strand, within GFF1365at 221.023 kb on + strand, within GFF1365at 221.023 kb on + strand, within GFF1365at 221.025 kb on + strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.026 kb on - strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.088 kb on + strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.089 kb on - strand, within GFF1365at 221.134 kb on + strand, within GFF1365at 221.135 kb on - strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.151 kb on + strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.152 kb on - strand, within GFF1365at 221.322 kb on + strand, within GFF1365at 221.323 kb on - strand, within GFF1365at 221.472 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.586 kb on + strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.587 kb on - strand, within GFF1365at 221.993 kb on + strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 221.994 kb on - strand, within GFF1366at 222.104 kb on + strand, within GFF1366at 222.105 kb on - strand, within GFF1366at 222.105 kb on - strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.167 kb on + strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.168 kb on - strand, within GFF1366at 222.533 kb on + strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.534 kb on - strand, within GFF1366at 222.534 kb on - strand, within GFF1366

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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219,857 + -2.8
219,857 + +0.6
219,858 - -0.4
219,905 + +0.1
219,906 - +0.0
220,237 + GFF1364 0.37 -0.4
220,238 - GFF1364 0.38 +1.0
220,238 - GFF1364 0.38 +2.0
220,297 + GFF1364 0.45 +0.6
220,297 + GFF1364 0.45 -0.8
220,297 + GFF1364 0.45 -0.1
220,297 + GFF1364 0.45 +1.0
220,297 + GFF1364 0.45 -0.2
220,298 - GFF1364 0.45 -0.4
220,298 - GFF1364 0.45 +0.4
220,298 - GFF1364 0.45 +0.6
220,298 - GFF1364 0.45 -0.2
220,298 - GFF1364 0.45 +0.1
220,324 + GFF1364 0.48 -0.2
220,324 + GFF1364 0.48 +1.6
220,325 - GFF1364 0.48 -0.1
220,325 - GFF1364 0.48 -0.0
220,403 - GFF1364 0.57 -1.4
220,403 - GFF1364 0.57 -0.2
220,616 - GFF1364 0.82 +2.1
220,730 - -0.0
220,759 + -0.0
220,760 - -0.5
220,803 + +0.0
220,803 + -0.9
220,804 - +0.2
221,023 + GFF1365 0.21 -0.1
221,023 + GFF1365 0.21 -0.1
221,023 + GFF1365 0.21 -0.2
221,025 + GFF1365 0.21 +0.3
221,026 - GFF1365 0.21 -0.3
221,026 - GFF1365 0.21 -0.5
221,026 - GFF1365 0.21 +0.6
221,026 - GFF1365 0.21 -0.0
221,026 - GFF1365 0.21 -1.1
221,088 + GFF1365 0.27 +0.5
221,088 + GFF1365 0.27 +0.4
221,088 + GFF1365 0.27 +0.2
221,088 + GFF1365 0.27 +0.3
221,088 + GFF1365 0.27 -0.2
221,088 + GFF1365 0.27 +0.2
221,088 + GFF1365 0.27 -1.0
221,088 + GFF1365 0.27 -0.2
221,089 - GFF1365 0.27 +1.0
221,089 - GFF1365 0.27 -0.6
221,089 - GFF1365 0.27 +1.0
221,089 - GFF1365 0.27 +0.2
221,089 - GFF1365 0.27 -0.9
221,089 - GFF1365 0.27 -1.6
221,134 + GFF1365 0.31 -1.0
221,135 - GFF1365 0.31 +0.8
221,151 + GFF1365 0.32 -0.1
221,151 + GFF1365 0.32 -2.6
221,151 + GFF1365 0.32 -1.6
221,151 + GFF1365 0.32 -0.2
221,151 + GFF1365 0.32 -0.3
221,151 + GFF1365 0.32 -0.3
221,152 - GFF1365 0.32 -0.8
221,152 - GFF1365 0.32 +0.2
221,152 - GFF1365 0.32 -0.4
221,322 + GFF1365 0.48 +0.1
221,323 - GFF1365 0.48 -0.4
221,472 + GFF1365 0.62 -0.2
221,586 + GFF1365 0.73 -0.2
221,586 + GFF1365 0.73 -0.3
221,586 + GFF1365 0.73 +0.5
221,586 + GFF1365 0.73 +0.0
221,586 + GFF1365 0.73 +0.6
221,586 + GFF1365 0.73 -0.8
221,586 + GFF1365 0.73 -0.0
221,587 - GFF1365 0.73 -0.4
221,587 - GFF1365 0.73 -0.4
221,587 - GFF1365 0.73 -0.6
221,587 - GFF1365 0.73 -0.3
221,587 - GFF1365 0.73 -0.6
221,993 + GFF1366 0.12 +0.1
221,994 - GFF1366 0.12 -0.2
221,994 - GFF1366 0.12 -0.6
221,994 - GFF1366 0.12 -0.2
221,994 - GFF1366 0.12 -0.1
221,994 - GFF1366 0.12 +0.1
222,104 + GFF1366 0.23 +0.3
222,105 - GFF1366 0.24 -0.5
222,105 - GFF1366 0.24 +0.4
222,167 + GFF1366 0.30 -0.4
222,167 + GFF1366 0.30 -1.7
222,167 + GFF1366 0.30 -0.7
222,167 + GFF1366 0.30 -0.9
222,168 - GFF1366 0.30 +0.0
222,168 - GFF1366 0.30 +0.1
222,168 - GFF1366 0.30 +0.3
222,168 - GFF1366 0.30 +0.1
222,533 + GFF1366 0.67 +0.4
222,534 - GFF1366 0.68 -0.6
222,534 - GFF1366 0.68 -1.2
222,534 - GFF1366 0.68 -0.3

Or see this region's nucleotide sequence