Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1360

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1358 and GFF1359 are separated by 13 nucleotidesGFF1359 and GFF1360 are separated by 77 nucleotidesGFF1360 and GFF1361 are separated by 326 nucleotidesGFF1361 and GFF1362 are separated by 47 nucleotides GFF1358 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 213,305 to 214,093 GFF1358 GFF1359 - NADPH:quinone oxidoreductase, at 214,107 to 214,658 GFF1359 GFF1360 - hypothetical protein, at 214,736 to 216,403 GFF1360 GFF1361 - Heat shock protein 60 family co-chaperone GroES, at 216,730 to 217,023 GFF1361 GFF1362 - Heat shock protein 60 family chaperone GroEL, at 217,071 to 218,717 GFF1362 Position (kb) 214 215 216 217Strain fitness (log2 ratio) -2 -1 0 1 2at 213.800 kb on + strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 213.801 kb on - strand, within GFF1358at 214.040 kb on + strandat 214.040 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.138 kb on + strandat 214.139 kb on - strandat 214.139 kb on - strandat 214.139 kb on - strandat 214.261 kb on + strand, within GFF1359at 214.261 kb on + strand, within GFF1359at 214.261 kb on + strand, within GFF1359at 214.367 kb on - strand, within GFF1359at 214.423 kb on + strand, within GFF1359at 214.424 kb on - strand, within GFF1359at 214.424 kb on - strand, within GFF1359at 214.519 kb on + strand, within GFF1359at 214.519 kb on + strand, within GFF1359at 214.520 kb on - strand, within GFF1359at 214.520 kb on - strand, within GFF1359at 214.520 kb on - strand, within GFF1359at 214.520 kb on - strand, within GFF1359at 214.520 kb on - strand, within GFF1359at 214.676 kb on + strandat 214.677 kb on - strandat 214.716 kb on + strandat 214.716 kb on + strandat 214.716 kb on + strandat 214.716 kb on + strandat 214.716 kb on + strandat 214.716 kb on + strandat 214.716 kb on + strandat 214.717 kb on - strandat 214.717 kb on - strandat 214.717 kb on - strandat 214.717 kb on - strandat 215.175 kb on + strand, within GFF1360at 215.176 kb on - strand, within GFF1360at 215.319 kb on + strand, within GFF1360at 215.319 kb on + strand, within GFF1360at 215.319 kb on + strand, within GFF1360at 215.319 kb on + strand, within GFF1360at 215.320 kb on + strand, within GFF1360at 215.320 kb on - strand, within GFF1360at 215.320 kb on - strand, within GFF1360at 215.320 kb on - strand, within GFF1360at 215.364 kb on + strand, within GFF1360at 215.421 kb on + strand, within GFF1360at 215.422 kb on - strand, within GFF1360at 215.514 kb on - strand, within GFF1360at 215.514 kb on - strand, within GFF1360at 215.532 kb on + strand, within GFF1360at 215.532 kb on + strand, within GFF1360at 215.533 kb on - strand, within GFF1360at 215.577 kb on + strand, within GFF1360at 215.577 kb on + strand, within GFF1360at 215.578 kb on - strand, within GFF1360at 215.578 kb on - strand, within GFF1360at 215.578 kb on - strand, within GFF1360at 215.578 kb on - strand, within GFF1360at 215.578 kb on - strand, within GFF1360at 215.578 kb on - strand, within GFF1360at 215.808 kb on + strand, within GFF1360at 215.808 kb on + strand, within GFF1360at 215.809 kb on - strand, within GFF1360at 215.809 kb on - strand, within GFF1360at 215.809 kb on - strand, within GFF1360at 215.809 kb on - strand, within GFF1360at 215.818 kb on - strand, within GFF1360at 215.818 kb on - strand, within GFF1360at 215.841 kb on + strand, within GFF1360at 215.841 kb on + strand, within GFF1360at 215.842 kb on - strand, within GFF1360at 215.895 kb on + strand, within GFF1360at 215.896 kb on - strand, within GFF1360at 216.323 kb on - strandat 216.333 kb on + strandat 216.333 kb on + strandat 216.333 kb on + strandat 216.333 kb on + strandat 216.333 kb on + strandat 216.439 kb on + strandat 216.439 kb on + strandat 216.440 kb on - strandat 216.504 kb on + strandat 216.504 kb on + strandat 216.563 kb on + strandat 216.601 kb on + strandat 216.601 kb on + strandat 216.602 kb on - strandat 216.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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213,800 + GFF1358 0.63 -0.6
213,801 - GFF1358 0.63 +0.1
213,801 - GFF1358 0.63 -0.3
213,801 - GFF1358 0.63 -0.1
213,801 - GFF1358 0.63 +0.2
213,801 - GFF1358 0.63 -0.2
214,040 + +1.9
214,040 + +0.1
214,138 + -0.2
214,138 + -1.9
214,138 + -1.3
214,138 + -1.1
214,139 - -0.1
214,139 - +0.4
214,139 - +0.7
214,261 + GFF1359 0.28 -0.5
214,261 + GFF1359 0.28 -0.9
214,261 + GFF1359 0.28 +0.0
214,367 - GFF1359 0.47 -0.9
214,423 + GFF1359 0.57 +0.4
214,424 - GFF1359 0.57 -0.1
214,424 - GFF1359 0.57 +1.1
214,519 + GFF1359 0.75 +0.5
214,519 + GFF1359 0.75 +0.5
214,520 - GFF1359 0.75 +0.6
214,520 - GFF1359 0.75 +1.0
214,520 - GFF1359 0.75 +0.0
214,520 - GFF1359 0.75 -1.8
214,520 - GFF1359 0.75 +1.4
214,676 + -0.2
214,677 - -0.5
214,716 + -0.2
214,716 + +0.4
214,716 + -0.3
214,716 + -0.2
214,716 + -1.1
214,716 + -0.2
214,716 + +0.0
214,717 - +1.4
214,717 - +0.2
214,717 - +0.5
214,717 - +0.3
215,175 + GFF1360 0.26 -0.2
215,176 - GFF1360 0.26 -0.2
215,319 + GFF1360 0.35 +0.4
215,319 + GFF1360 0.35 +0.4
215,319 + GFF1360 0.35 +0.0
215,319 + GFF1360 0.35 +0.5
215,320 + GFF1360 0.35 -0.2
215,320 - GFF1360 0.35 -0.0
215,320 - GFF1360 0.35 -0.1
215,320 - GFF1360 0.35 -0.1
215,364 + GFF1360 0.38 +0.8
215,421 + GFF1360 0.41 +0.2
215,422 - GFF1360 0.41 +0.6
215,514 - GFF1360 0.47 +0.4
215,514 - GFF1360 0.47 -0.1
215,532 + GFF1360 0.48 -0.1
215,532 + GFF1360 0.48 +0.6
215,533 - GFF1360 0.48 -0.3
215,577 + GFF1360 0.50 -1.5
215,577 + GFF1360 0.50 -0.3
215,578 - GFF1360 0.50 +0.6
215,578 - GFF1360 0.50 -1.0
215,578 - GFF1360 0.50 +0.0
215,578 - GFF1360 0.50 -0.1
215,578 - GFF1360 0.50 +0.1
215,578 - GFF1360 0.50 +0.6
215,808 + GFF1360 0.64 -0.0
215,808 + GFF1360 0.64 +0.1
215,809 - GFF1360 0.64 +1.8
215,809 - GFF1360 0.64 +1.0
215,809 - GFF1360 0.64 +0.1
215,809 - GFF1360 0.64 +0.4
215,818 - GFF1360 0.65 -0.3
215,818 - GFF1360 0.65 +1.1
215,841 + GFF1360 0.66 +0.3
215,841 + GFF1360 0.66 +0.3
215,842 - GFF1360 0.66 -0.3
215,895 + GFF1360 0.69 -1.1
215,896 - GFF1360 0.70 +0.4
216,323 - -0.1
216,333 + +0.2
216,333 + +0.7
216,333 + -0.0
216,333 + -1.4
216,333 + +0.2
216,439 + -0.2
216,439 + -0.6
216,440 - +0.9
216,504 + -0.0
216,504 + +0.1
216,563 + -2.4
216,601 + -0.2
216,601 + -0.1
216,602 - -1.4
216,630 + -1.0

Or see this region's nucleotide sequence