Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1113

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1110 and GFF1111 overlap by 35 nucleotidesGFF1111 and GFF1112 are separated by 22 nucleotidesGFF1112 and GFF1113 overlap by 8 nucleotidesGFF1113 and GFF1114 are separated by 1 nucleotides GFF1110 - hypothetical protein, at 38,911 to 40,527 GFF1110 GFF1111 - Arsenate reductase (EC 1.20.4.1), at 40,493 to 40,729 GFF1111 GFF1112 - Transcriptional regulator, ArsR family, at 40,752 to 41,078 GFF1112 GFF1113 - Permease of the major facilitator superfamily, at 41,071 to 42,333 GFF1113 GFF1114 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 42,335 to 43,378 GFF1114 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.088 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.118 kb on + strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.172 kb on + strand, within GFF1110at 40.172 kb on + strand, within GFF1110at 40.173 kb on - strand, within GFF1110at 40.221 kb on + strand, within GFF1110at 40.244 kb on + strand, within GFF1110at 40.244 kb on + strand, within GFF1110at 40.285 kb on - strand, within GFF1110at 40.292 kb on + strand, within GFF1110at 40.292 kb on + strand, within GFF1110at 40.390 kb on + strandat 40.390 kb on + strandat 40.390 kb on + strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.412 kb on + strandat 40.412 kb on + strandat 40.413 kb on - strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.529 kb on + strand, within GFF1111at 40.529 kb on + strand, within GFF1111at 40.529 kb on + strand, within GFF1111at 40.530 kb on - strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.620 kb on + strand, within GFF1111at 40.620 kb on + strand, within GFF1111at 40.713 kb on + strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.714 kb on - strandat 40.714 kb on - strandat 41.131 kb on + strandat 41.131 kb on + strandat 41.132 kb on - strandat 41.132 kb on - strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.207 kb on + strand, within GFF1113at 41.303 kb on + strand, within GFF1113at 41.304 kb on - strand, within GFF1113at 41.318 kb on + strand, within GFF1113at 41.319 kb on - strand, within GFF1113at 41.319 kb on - strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.601 kb on - strand, within GFF1113at 41.601 kb on - strand, within GFF1113at 42.182 kb on + strand, within GFF1113at 42.182 kb on + strand, within GFF1113at 42.183 kb on - strand, within GFF1113at 42.183 kb on - strand, within GFF1113at 42.183 kb on - strand, within GFF1113at 42.183 kb on - strand, within GFF1113at 42.183 kb on - strand, within GFF1113at 42.288 kb on - strandat 42.341 kb on - strandat 42.366 kb on - strandat 42.387 kb on + strandat 42.414 kb on + strandat 42.415 kb on - strandat 42.489 kb on + strand, within GFF1114at 42.490 kb on - strand, within GFF1114at 42.685 kb on - strand, within GFF1114at 42.927 kb on + strand, within GFF1114at 42.928 kb on - strand, within GFF1114at 42.928 kb on - strand, within GFF1114

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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40,088 + GFF1110 0.73 +0.2
40,094 + GFF1110 0.73 +0.2
40,094 + GFF1110 0.73 +0.2
40,094 + GFF1110 0.73 +0.7
40,094 + GFF1110 0.73 -0.5
40,094 + GFF1110 0.73 +0.7
40,095 - GFF1110 0.73 +0.3
40,095 - GFF1110 0.73 +0.3
40,095 - GFF1110 0.73 -1.1
40,095 - GFF1110 0.73 -0.2
40,118 + GFF1110 0.75 -0.5
40,119 - GFF1110 0.75 +0.7
40,119 - GFF1110 0.75 -0.3
40,119 - GFF1110 0.75 +0.1
40,119 - GFF1110 0.75 +0.7
40,172 + GFF1110 0.78 -0.3
40,172 + GFF1110 0.78 +0.6
40,173 - GFF1110 0.78 -0.9
40,221 + GFF1110 0.81 +1.3
40,244 + GFF1110 0.82 -1.6
40,244 + GFF1110 0.82 -0.2
40,285 - GFF1110 0.85 -0.3
40,292 + GFF1110 0.85 +0.0
40,292 + GFF1110 0.85 -0.9
40,390 + +0.0
40,390 + -0.3
40,390 + +0.5
40,391 - -0.1
40,391 - +0.1
40,391 - +0.0
40,391 - +0.6
40,412 + -0.0
40,412 + -0.2
40,413 - +0.6
40,525 + -0.2
40,525 + -0.0
40,525 + +0.3
40,525 + -0.2
40,526 - +0.0
40,526 - +0.0
40,526 - -0.1
40,526 - +0.4
40,526 - -0.4
40,526 - +0.5
40,529 + GFF1111 0.15 +0.1
40,529 + GFF1111 0.15 -0.7
40,529 + GFF1111 0.15 +0.2
40,530 - GFF1111 0.16 -1.3
40,538 + GFF1111 0.19 +0.0
40,538 + GFF1111 0.19 -0.6
40,538 + GFF1111 0.19 +0.4
40,538 + GFF1111 0.19 -1.9
40,538 + GFF1111 0.19 +1.1
40,538 + GFF1111 0.19 -0.2
40,538 + GFF1111 0.19 -0.2
40,538 + GFF1111 0.19 -0.4
40,539 - GFF1111 0.19 -0.2
40,539 - GFF1111 0.19 +0.1
40,539 - GFF1111 0.19 -0.2
40,620 + GFF1111 0.54 +0.1
40,620 + GFF1111 0.54 +0.0
40,713 + -0.3
40,713 + -0.1
40,713 + +0.2
40,713 + -0.0
40,714 - -0.8
40,714 - -0.0
41,131 + +0.1
41,131 + +0.1
41,132 - +0.6
41,132 - -0.2
41,186 + +0.4
41,186 + +0.0
41,186 + -0.4
41,186 + +0.1
41,207 + GFF1113 0.11 -0.0
41,303 + GFF1113 0.18 -0.9
41,304 - GFF1113 0.18 -0.4
41,318 + GFF1113 0.20 -0.2
41,319 - GFF1113 0.20 +0.2
41,319 - GFF1113 0.20 -0.1
41,408 + GFF1113 0.27 -0.6
41,408 + GFF1113 0.27 -0.4
41,408 + GFF1113 0.27 -0.2
41,601 - GFF1113 0.42 +0.5
41,601 - GFF1113 0.42 +0.3
42,182 + GFF1113 0.88 -0.0
42,182 + GFF1113 0.88 +0.1
42,183 - GFF1113 0.88 +0.1
42,183 - GFF1113 0.88 +0.4
42,183 - GFF1113 0.88 +0.3
42,183 - GFF1113 0.88 -0.4
42,183 - GFF1113 0.88 +0.1
42,288 - +0.5
42,341 - +0.4
42,366 - +0.2
42,387 + -1.0
42,414 + -0.1
42,415 - -0.0
42,489 + GFF1114 0.15 -0.7
42,490 - GFF1114 0.15 -0.3
42,685 - GFF1114 0.34 +1.2
42,927 + GFF1114 0.57 -0.5
42,928 - GFF1114 0.57 +0.7
42,928 - GFF1114 0.57 -0.2

Or see this region's nucleotide sequence