Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1110

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1109 and GFF1110 are separated by 488 nucleotidesGFF1110 and GFF1111 overlap by 35 nucleotidesGFF1111 and GFF1112 are separated by 22 nucleotidesGFF1112 and GFF1113 overlap by 8 nucleotides GFF1109 - Phosphoglycerol transferase I (EC 2.7.8.20), at 36,383 to 38,422 GFF1109 GFF1110 - hypothetical protein, at 38,911 to 40,527 GFF1110 GFF1111 - Arsenate reductase (EC 1.20.4.1), at 40,493 to 40,729 GFF1111 GFF1112 - Transcriptional regulator, ArsR family, at 40,752 to 41,078 GFF1112 GFF1113 - Permease of the major facilitator superfamily, at 41,071 to 42,333 GFF1113 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 37.959 kb on + strand, within GFF1109at 37.959 kb on + strand, within GFF1109at 37.959 kb on + strand, within GFF1109at 37.960 kb on - strand, within GFF1109at 37.960 kb on - strand, within GFF1109at 37.960 kb on - strand, within GFF1109at 37.960 kb on - strand, within GFF1109at 37.977 kb on + strand, within GFF1109at 37.978 kb on - strand, within GFF1109at 38.086 kb on - strand, within GFF1109at 38.144 kb on + strand, within GFF1109at 38.144 kb on + strand, within GFF1109at 38.145 kb on - strand, within GFF1109at 38.155 kb on + strand, within GFF1109at 38.156 kb on - strand, within GFF1109at 38.156 kb on - strand, within GFF1109at 38.156 kb on - strand, within GFF1109at 38.156 kb on - strand, within GFF1109at 38.276 kb on + strandat 38.276 kb on + strandat 38.277 kb on - strandat 38.285 kb on + strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.493 kb on + strandat 38.493 kb on + strandat 38.508 kb on + strandat 38.508 kb on + strandat 38.508 kb on + strandat 38.509 kb on - strandat 38.544 kb on + strandat 38.545 kb on - strandat 38.545 kb on - strandat 38.609 kb on + strandat 38.609 kb on + strandat 38.609 kb on + strandat 38.610 kb on - strandat 38.669 kb on + strandat 38.670 kb on - strandat 38.670 kb on - strandat 38.676 kb on + strandat 38.676 kb on + strandat 38.677 kb on - strandat 38.696 kb on - strandat 38.743 kb on + strandat 38.777 kb on + strandat 38.784 kb on + strandat 38.785 kb on - strandat 38.785 kb on - strandat 38.807 kb on + strandat 38.841 kb on + strandat 38.901 kb on - strandat 38.901 kb on - strandat 38.963 kb on + strandat 38.963 kb on + strandat 38.963 kb on + strandat 38.964 kb on - strandat 38.964 kb on - strandat 38.964 kb on - strandat 38.996 kb on + strandat 38.997 kb on - strandat 39.047 kb on + strandat 39.047 kb on + strandat 39.048 kb on - strandat 39.059 kb on - strandat 39.059 kb on - strandat 39.088 kb on + strand, within GFF1110at 39.089 kb on - strand, within GFF1110at 39.109 kb on + strand, within GFF1110at 39.110 kb on - strand, within GFF1110at 39.213 kb on + strand, within GFF1110at 39.213 kb on + strand, within GFF1110at 39.213 kb on + strand, within GFF1110at 39.213 kb on + strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.214 kb on - strand, within GFF1110at 39.258 kb on - strand, within GFF1110at 39.282 kb on + strand, within GFF1110at 39.282 kb on + strand, within GFF1110at 39.282 kb on + strand, within GFF1110at 39.283 kb on - strand, within GFF1110at 39.283 kb on - strand, within GFF1110at 39.283 kb on - strand, within GFF1110at 39.283 kb on - strand, within GFF1110at 39.283 kb on - strand, within GFF1110at 39.284 kb on - strand, within GFF1110at 39.428 kb on + strand, within GFF1110at 39.428 kb on + strand, within GFF1110at 39.429 kb on - strand, within GFF1110at 39.429 kb on - strand, within GFF1110at 39.435 kb on + strand, within GFF1110at 39.435 kb on + strand, within GFF1110at 39.436 kb on - strand, within GFF1110at 39.470 kb on + strand, within GFF1110at 39.615 kb on + strand, within GFF1110at 39.798 kb on - strand, within GFF1110at 39.821 kb on - strand, within GFF1110at 39.821 kb on - strand, within GFF1110at 39.828 kb on - strand, within GFF1110at 39.828 kb on - strand, within GFF1110at 39.828 kb on - strand, within GFF1110at 39.938 kb on + strand, within GFF1110at 39.938 kb on + strand, within GFF1110at 39.938 kb on + strand, within GFF1110at 40.088 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.094 kb on + strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.095 kb on - strand, within GFF1110at 40.118 kb on + strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.119 kb on - strand, within GFF1110at 40.172 kb on + strand, within GFF1110at 40.172 kb on + strand, within GFF1110at 40.173 kb on - strand, within GFF1110at 40.221 kb on + strand, within GFF1110at 40.244 kb on + strand, within GFF1110at 40.244 kb on + strand, within GFF1110at 40.285 kb on - strand, within GFF1110at 40.292 kb on + strand, within GFF1110at 40.292 kb on + strand, within GFF1110at 40.390 kb on + strandat 40.390 kb on + strandat 40.390 kb on + strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.391 kb on - strandat 40.412 kb on + strandat 40.412 kb on + strandat 40.413 kb on - strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.525 kb on + strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.526 kb on - strandat 40.529 kb on + strand, within GFF1111at 40.529 kb on + strand, within GFF1111at 40.529 kb on + strand, within GFF1111at 40.530 kb on - strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.538 kb on + strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.539 kb on - strand, within GFF1111at 40.620 kb on + strand, within GFF1111at 40.620 kb on + strand, within GFF1111at 40.713 kb on + strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.713 kb on + strandat 40.714 kb on - strandat 40.714 kb on - strandat 41.131 kb on + strandat 41.131 kb on + strandat 41.132 kb on - strandat 41.132 kb on - strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.186 kb on + strandat 41.207 kb on + strand, within GFF1113at 41.303 kb on + strand, within GFF1113at 41.304 kb on - strand, within GFF1113at 41.318 kb on + strand, within GFF1113at 41.319 kb on - strand, within GFF1113at 41.319 kb on - strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.408 kb on + strand, within GFF1113at 41.408 kb on + strand, within GFF1113

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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37,959 + GFF1109 0.77 +0.2
37,959 + GFF1109 0.77 +0.3
37,959 + GFF1109 0.77 -0.3
37,960 - GFF1109 0.77 +1.0
37,960 - GFF1109 0.77 +0.2
37,960 - GFF1109 0.77 +0.2
37,960 - GFF1109 0.77 -0.2
37,977 + GFF1109 0.78 +0.4
37,978 - GFF1109 0.78 -1.7
38,086 - GFF1109 0.83 +0.0
38,144 + GFF1109 0.86 -0.0
38,144 + GFF1109 0.86 +0.2
38,145 - GFF1109 0.86 -0.1
38,155 + GFF1109 0.87 -0.4
38,156 - GFF1109 0.87 -0.1
38,156 - GFF1109 0.87 +0.4
38,156 - GFF1109 0.87 +0.8
38,156 - GFF1109 0.87 -0.1
38,276 + +0.8
38,276 + -0.2
38,277 - +0.2
38,285 + +0.3
38,439 - -2.0
38,439 - +0.0
38,493 + +0.4
38,493 + +0.5
38,508 + -0.2
38,508 + -0.9
38,508 + -0.1
38,509 - -0.1
38,544 + +0.4
38,545 - -0.1
38,545 - +0.7
38,609 + -0.4
38,609 + +0.5
38,609 + -0.2
38,610 - -2.1
38,669 + +1.1
38,670 - +0.0
38,670 - -0.0
38,676 + +0.2
38,676 + +0.6
38,677 - +0.2
38,696 - +0.0
38,743 + +0.0
38,777 + +0.4
38,784 + -0.6
38,785 - +0.4
38,785 - -0.4
38,807 + +0.4
38,841 + -0.3
38,901 - +0.0
38,901 - +0.6
38,963 + -0.5
38,963 + +0.2
38,963 + +0.5
38,964 - -1.9
38,964 - -0.5
38,964 - +0.6
38,996 + -0.6
38,997 - -0.1
39,047 + -0.1
39,047 + +0.6
39,048 - +1.1
39,059 - -0.6
39,059 - -0.7
39,088 + GFF1110 0.11 -0.2
39,089 - GFF1110 0.11 -0.3
39,109 + GFF1110 0.12 +0.3
39,110 - GFF1110 0.12 +0.2
39,213 + GFF1110 0.19 +0.5
39,213 + GFF1110 0.19 +0.4
39,213 + GFF1110 0.19 +0.3
39,213 + GFF1110 0.19 +0.4
39,214 - GFF1110 0.19 +0.1
39,214 - GFF1110 0.19 -0.1
39,214 - GFF1110 0.19 -0.1
39,214 - GFF1110 0.19 -0.6
39,214 - GFF1110 0.19 -0.3
39,214 - GFF1110 0.19 +0.3
39,214 - GFF1110 0.19 +0.2
39,258 - GFF1110 0.21 +1.0
39,282 + GFF1110 0.23 -0.3
39,282 + GFF1110 0.23 +0.4
39,282 + GFF1110 0.23 +0.4
39,283 - GFF1110 0.23 -0.3
39,283 - GFF1110 0.23 +0.0
39,283 - GFF1110 0.23 +0.3
39,283 - GFF1110 0.23 +0.3
39,283 - GFF1110 0.23 +0.2
39,284 - GFF1110 0.23 +0.5
39,428 + GFF1110 0.32 +0.8
39,428 + GFF1110 0.32 -0.7
39,429 - GFF1110 0.32 +0.3
39,429 - GFF1110 0.32 +0.4
39,435 + GFF1110 0.32 -0.5
39,435 + GFF1110 0.32 +0.3
39,436 - GFF1110 0.32 +3.8
39,470 + GFF1110 0.35 -0.7
39,615 + GFF1110 0.44 +0.5
39,798 - GFF1110 0.55 +0.4
39,821 - GFF1110 0.56 +1.9
39,821 - GFF1110 0.56 -1.5
39,828 - GFF1110 0.57 -0.5
39,828 - GFF1110 0.57 -0.5
39,828 - GFF1110 0.57 +0.3
39,938 + GFF1110 0.64 +0.2
39,938 + GFF1110 0.64 -1.6
39,938 + GFF1110 0.64 +1.4
40,088 + GFF1110 0.73 +0.2
40,094 + GFF1110 0.73 +0.2
40,094 + GFF1110 0.73 +0.2
40,094 + GFF1110 0.73 +0.7
40,094 + GFF1110 0.73 -0.5
40,094 + GFF1110 0.73 +0.7
40,094 + GFF1110 0.73 +1.4
40,095 - GFF1110 0.73 +0.3
40,095 - GFF1110 0.73 +0.3
40,095 - GFF1110 0.73 -1.1
40,095 - GFF1110 0.73 +1.4
40,095 - GFF1110 0.73 -0.1
40,118 + GFF1110 0.75 -0.5
40,119 - GFF1110 0.75 +0.7
40,119 - GFF1110 0.75 -0.2
40,119 - GFF1110 0.75 +0.1
40,119 - GFF1110 0.75 +0.7
40,172 + GFF1110 0.78 -0.3
40,172 + GFF1110 0.78 +0.6
40,173 - GFF1110 0.78 -0.9
40,221 + GFF1110 0.81 +1.3
40,244 + GFF1110 0.82 -1.6
40,244 + GFF1110 0.82 -0.1
40,285 - GFF1110 0.85 -0.3
40,292 + GFF1110 0.85 +0.0
40,292 + GFF1110 0.85 -0.9
40,390 + +0.0
40,390 + -0.3
40,390 + +0.5
40,391 - -0.1
40,391 - +0.1
40,391 - +0.0
40,391 - +0.6
40,412 + +0.0
40,412 + -0.1
40,413 - +0.6
40,525 + -0.2
40,525 + -0.0
40,525 + +0.3
40,525 + -0.1
40,526 - +0.0
40,526 - +0.0
40,526 - -0.1
40,526 - +0.4
40,526 - -0.4
40,526 - +0.5
40,529 + GFF1111 0.15 +0.1
40,529 + GFF1111 0.15 -0.7
40,529 + GFF1111 0.15 +0.2
40,530 - GFF1111 0.16 -1.3
40,538 + GFF1111 0.19 +0.1
40,538 + GFF1111 0.19 -0.6
40,538 + GFF1111 0.19 +0.4
40,538 + GFF1111 0.19 -1.9
40,538 + GFF1111 0.19 +1.1
40,538 + GFF1111 0.19 -0.1
40,538 + GFF1111 0.19 -0.2
40,538 + GFF1111 0.19 -0.4
40,539 - GFF1111 0.19 -0.1
40,539 - GFF1111 0.19 +0.1
40,539 - GFF1111 0.19 -0.2
40,620 + GFF1111 0.54 +0.1
40,620 + GFF1111 0.54 +0.0
40,713 + -0.3
40,713 + -0.1
40,713 + +0.2
40,713 + -0.0
40,714 - -0.8
40,714 - -0.0
41,131 + +0.1
41,131 + +0.1
41,132 - +0.6
41,132 - -0.2
41,186 + +0.4
41,186 + +0.0
41,186 + -0.4
41,186 + +0.1
41,207 + GFF1113 0.11 -0.0
41,303 + GFF1113 0.18 -0.9
41,304 - GFF1113 0.18 -0.4
41,318 + GFF1113 0.20 -0.2
41,319 - GFF1113 0.20 +0.2
41,319 - GFF1113 0.20 -0.1
41,408 + GFF1113 0.27 -0.6
41,408 + GFF1113 0.27 -0.4
41,408 + GFF1113 0.27 -0.1

Or see this region's nucleotide sequence