Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1094 and GFF1095 are separated by 12 nucleotides
GFF1094 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 10,396 to 13,596
GFF1094
GFF1095 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family, at 13,609 to 13,800
GFF1095
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.610 kb on + strand, within GFF1094 at 12.610 kb on + strand, within GFF1094 at 12.610 kb on + strand, within GFF1094 at 12.611 kb on - strand, within GFF1094 at 12.611 kb on - strand, within GFF1094 at 12.611 kb on - strand, within GFF1094 at 12.616 kb on - strand, within GFF1094 at 12.625 kb on + strand, within GFF1094 at 12.650 kb on - strand, within GFF1094 at 12.725 kb on - strand, within GFF1094 at 12.980 kb on + strand, within GFF1094 at 12.981 kb on - strand, within GFF1094 at 13.039 kb on - strand, within GFF1094 at 13.045 kb on - strand, within GFF1094 at 13.045 kb on - strand, within GFF1094 at 13.123 kb on - strand, within GFF1094 at 13.198 kb on - strand, within GFF1094 at 13.201 kb on + strand, within GFF1094 at 13.202 kb on - strand, within GFF1094 at 13.286 kb on + strand at 13.286 kb on + strand at 13.287 kb on - strand at 13.305 kb on + strand at 13.327 kb on + strand at 13.327 kb on + strand at 13.334 kb on + strand at 13.470 kb on + strand at 13.676 kb on + strand, within GFF1095 at 13.677 kb on - strand, within GFF1095 at 13.677 kb on - strand, within GFF1095 at 13.857 kb on + strand at 13.857 kb on + strand at 13.857 kb on + strand at 14.018 kb on - strand at 14.018 kb on - strand at 14.123 kb on - strand at 14.194 kb on + strand at 14.345 kb on + strand at 14.345 kb on + strand at 14.346 kb on - strand at 14.397 kb on + strand at 14.398 kb on - strand at 14.398 kb on - strand at 14.736 kb on + strand at 14.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 12,610 + GFF1094 0.69 -1.1 12,610 + GFF1094 0.69 -0.1 12,610 + GFF1094 0.69 +0.7 12,611 - GFF1094 0.69 +0.7 12,611 - GFF1094 0.69 -0.9 12,611 - GFF1094 0.69 -0.9 12,616 - GFF1094 0.69 -0.6 12,625 + GFF1094 0.70 +0.7 12,650 - GFF1094 0.70 -0.4 12,725 - GFF1094 0.73 -0.6 12,980 + GFF1094 0.81 +0.1 12,981 - GFF1094 0.81 -0.3 13,039 - GFF1094 0.83 +0.7 13,045 - GFF1094 0.83 -0.3 13,045 - GFF1094 0.83 +1.0 13,123 - GFF1094 0.85 -0.2 13,198 - GFF1094 0.88 +0.4 13,201 + GFF1094 0.88 +1.2 13,202 - GFF1094 0.88 -1.9 13,286 + +0.4 13,286 + +0.1 13,287 - -0.6 13,305 + -1.4 13,327 + -0.1 13,327 + -0.2 13,334 + +2.0 13,470 + +0.2 13,676 + GFF1095 0.35 +0.8 13,677 - GFF1095 0.35 +0.0 13,677 - GFF1095 0.35 +0.9 13,857 + +0.2 13,857 + -0.7 13,857 + -0.1 14,018 - -0.1 14,018 - -0.7 14,123 - +0.7 14,194 + -0.6 14,345 + -0.1 14,345 + -1.4 14,346 - -0.2 14,397 + -0.5 14,398 - +0.2 14,398 - +0.9 14,736 + -0.9 14,736 + +0.0
Or see this region's nucleotide sequence