Experiment: Galactan from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03815 and BACOVA_03816 are separated by 84 nucleotides BACOVA_03816 and BACOVA_03817 are separated by 70 nucleotides BACOVA_03817 and BACOVA_03818 are separated by 47 nucleotides
BACOVA_03815: BACOVA_03815 - TonB-dependent receptor plug domain protein, at 160,438 to 162,624
_03815
BACOVA_03816: BACOVA_03816 - hypothetical protein, at 162,709 to 163,065
_03816
BACOVA_03817: BACOVA_03817 - TrkA C-terminal domain protein, at 163,136 to 164,734
_03817
BACOVA_03818: BACOVA_03818 - cation diffusion facilitator family transporter, at 164,782 to 165,684
_03818
Position (kb) 163
164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.159 kb on + strand, within BACOVA_03815 at 162.247 kb on + strand, within BACOVA_03815 at 162.250 kb on + strand, within BACOVA_03815 at 162.251 kb on - strand, within BACOVA_03815 at 162.254 kb on - strand, within BACOVA_03815 at 162.284 kb on - strand, within BACOVA_03815 at 162.345 kb on + strand, within BACOVA_03815 at 162.348 kb on - strand, within BACOVA_03815 at 162.404 kb on + strand, within BACOVA_03815 at 162.405 kb on - strand, within BACOVA_03815 at 162.438 kb on + strand at 162.442 kb on - strand at 162.442 kb on - strand at 162.460 kb on + strand at 162.460 kb on + strand at 162.463 kb on - strand at 162.465 kb on - strand at 162.530 kb on - strand at 162.614 kb on + strand at 162.636 kb on + strand at 162.654 kb on - strand at 162.654 kb on - strand at 162.674 kb on - strand at 162.695 kb on + strand at 162.696 kb on - strand at 162.696 kb on - strand at 162.744 kb on + strand at 162.744 kb on + strand at 162.745 kb on - strand, within BACOVA_03816 at 162.777 kb on - strand, within BACOVA_03816 at 162.777 kb on - strand, within BACOVA_03816 at 162.786 kb on - strand, within BACOVA_03816 at 162.809 kb on + strand, within BACOVA_03816 at 162.810 kb on - strand, within BACOVA_03816 at 162.869 kb on - strand, within BACOVA_03816 at 163.018 kb on - strand, within BACOVA_03816 at 163.022 kb on - strand, within BACOVA_03816 at 163.034 kb on + strand at 163.035 kb on + strand at 163.042 kb on - strand at 163.101 kb on - strand at 163.141 kb on - strand at 163.182 kb on - strand at 163.209 kb on + strand at 163.209 kb on + strand at 163.210 kb on - strand at 163.215 kb on - strand at 163.229 kb on - strand at 163.347 kb on - strand, within BACOVA_03817 at 163.429 kb on + strand, within BACOVA_03817 at 163.508 kb on - strand, within BACOVA_03817 at 163.531 kb on + strand, within BACOVA_03817 at 163.557 kb on - strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.615 kb on + strand, within BACOVA_03817 at 163.619 kb on + strand, within BACOVA_03817 at 163.724 kb on - strand, within BACOVA_03817 at 163.757 kb on - strand, within BACOVA_03817 at 163.870 kb on + strand, within BACOVA_03817 at 163.874 kb on + strand, within BACOVA_03817 at 163.952 kb on - strand, within BACOVA_03817 at 163.994 kb on + strand, within BACOVA_03817 at 164.003 kb on + strand, within BACOVA_03817 at 164.004 kb on - strand, within BACOVA_03817 at 164.008 kb on - strand, within BACOVA_03817 at 164.030 kb on - strand, within BACOVA_03817 at 164.039 kb on - strand, within BACOVA_03817 at 164.039 kb on - strand, within BACOVA_03817 at 164.045 kb on - strand, within BACOVA_03817 at 164.045 kb on - strand, within BACOVA_03817 at 164.119 kb on + strand, within BACOVA_03817 at 164.193 kb on - strand, within BACOVA_03817 at 164.299 kb on - strand, within BACOVA_03817 at 164.327 kb on - strand, within BACOVA_03817 at 164.389 kb on + strand, within BACOVA_03817 at 164.398 kb on + strand, within BACOVA_03817 at 164.454 kb on - strand, within BACOVA_03817 at 164.461 kb on + strand, within BACOVA_03817 at 164.567 kb on + strand, within BACOVA_03817 at 164.568 kb on - strand, within BACOVA_03817 at 164.642 kb on + strand at 164.720 kb on + strand at 164.741 kb on - strand at 164.748 kb on - strand at 164.752 kb on - strand at 164.770 kb on + strand at 164.877 kb on + strand, within BACOVA_03818 at 164.878 kb on - strand, within BACOVA_03818 at 164.878 kb on - strand, within BACOVA_03818 at 164.878 kb on - strand, within BACOVA_03818 at 164.908 kb on - strand, within BACOVA_03818 at 164.910 kb on + strand, within BACOVA_03818 at 164.964 kb on + strand, within BACOVA_03818 at 165.017 kb on - strand, within BACOVA_03818 at 165.017 kb on - strand, within BACOVA_03818 at 165.099 kb on + strand, within BACOVA_03818 at 165.102 kb on + strand, within BACOVA_03818 at 165.102 kb on + strand, within BACOVA_03818 at 165.103 kb on - strand, within BACOVA_03818 at 165.154 kb on - strand, within BACOVA_03818 at 165.154 kb on - strand, within BACOVA_03818 at 165.155 kb on + strand, within BACOVA_03818 at 165.155 kb on + strand, within BACOVA_03818 at 165.156 kb on - strand, within BACOVA_03818 at 165.156 kb on - strand, within BACOVA_03818 at 165.156 kb on - strand, within BACOVA_03818 at 165.159 kb on + strand, within BACOVA_03818 at 165.159 kb on + strand, within BACOVA_03818 at 165.160 kb on - strand, within BACOVA_03818 at 165.160 kb on - strand, within BACOVA_03818 at 165.162 kb on + strand, within BACOVA_03818 at 165.165 kb on + strand, within BACOVA_03818 at 165.202 kb on - strand, within BACOVA_03818 at 165.202 kb on - strand, within BACOVA_03818 at 165.222 kb on - strand, within BACOVA_03818 at 165.246 kb on + strand, within BACOVA_03818 at 165.349 kb on + strand, within BACOVA_03818 at 165.349 kb on + strand, within BACOVA_03818 at 165.358 kb on + strand, within BACOVA_03818 at 165.375 kb on + strand, within BACOVA_03818 at 165.400 kb on - strand, within BACOVA_03818 at 165.409 kb on + strand, within BACOVA_03818 at 165.429 kb on + strand, within BACOVA_03818 at 165.429 kb on + strand, within BACOVA_03818 at 165.429 kb on + strand, within BACOVA_03818 at 165.430 kb on - strand, within BACOVA_03818 at 165.438 kb on + strand, within BACOVA_03818 at 165.446 kb on + strand, within BACOVA_03818 at 165.460 kb on - strand, within BACOVA_03818 at 165.503 kb on - strand, within BACOVA_03818 at 165.514 kb on + strand, within BACOVA_03818 at 165.547 kb on + strand, within BACOVA_03818 at 165.564 kb on - strand, within BACOVA_03818 at 165.586 kb on + strand, within BACOVA_03818 at 165.602 kb on - strand at 165.619 kb on + strand at 165.624 kb on + strand at 165.657 kb on + strand at 165.689 kb on + strand at 165.697 kb on + strand at 165.697 kb on + strand at 165.698 kb on - strand at 165.698 kb on - strand at 165.702 kb on + strand at 165.711 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C) remove 162,159 + BACOVA_03815 0.79 -0.9 162,247 + BACOVA_03815 0.83 -0.5 162,250 + BACOVA_03815 0.83 -0.4 162,251 - BACOVA_03815 0.83 +0.5 162,254 - BACOVA_03815 0.83 +1.5 162,284 - BACOVA_03815 0.84 -0.1 162,345 + BACOVA_03815 0.87 -0.3 162,348 - BACOVA_03815 0.87 +0.1 162,404 + BACOVA_03815 0.90 +0.5 162,405 - BACOVA_03815 0.90 -1.8 162,438 + +0.1 162,442 - +1.1 162,442 - +0.2 162,460 + +0.0 162,460 + +0.5 162,463 - -1.2 162,465 - +0.3 162,530 - -1.0 162,614 + -0.4 162,636 + -0.3 162,654 - -1.5 162,654 - +0.7 162,674 - -1.1 162,695 + -0.1 162,696 - +0.6 162,696 - -0.1 162,744 + +0.8 162,744 + +0.0 162,745 - BACOVA_03816 0.10 +0.0 162,777 - BACOVA_03816 0.19 +0.1 162,777 - BACOVA_03816 0.19 +0.5 162,786 - BACOVA_03816 0.22 -0.6 162,809 + BACOVA_03816 0.28 -0.2 162,810 - BACOVA_03816 0.28 +0.8 162,869 - BACOVA_03816 0.45 -0.8 163,018 - BACOVA_03816 0.87 -0.9 163,022 - BACOVA_03816 0.88 +0.7 163,034 + -1.2 163,035 + -0.4 163,042 - -0.8 163,101 - +1.0 163,141 - +0.2 163,182 - +0.5 163,209 + +0.0 163,209 + -0.2 163,210 - -0.7 163,215 - -2.1 163,229 - +0.7 163,347 - BACOVA_03817 0.13 +1.9 163,429 + BACOVA_03817 0.18 -0.4 163,508 - BACOVA_03817 0.23 +0.5 163,531 + BACOVA_03817 0.25 +0.2 163,557 - BACOVA_03817 0.26 -0.6 163,615 + BACOVA_03817 0.30 +0.0 163,615 + BACOVA_03817 0.30 -0.4 163,615 + BACOVA_03817 0.30 -0.9 163,619 + BACOVA_03817 0.30 -0.8 163,724 - BACOVA_03817 0.37 +0.2 163,757 - BACOVA_03817 0.39 -0.9 163,870 + BACOVA_03817 0.46 -0.3 163,874 + BACOVA_03817 0.46 -0.6 163,952 - BACOVA_03817 0.51 -0.6 163,994 + BACOVA_03817 0.54 -0.1 164,003 + BACOVA_03817 0.54 +0.6 164,004 - BACOVA_03817 0.54 -1.3 164,008 - BACOVA_03817 0.55 -1.1 164,030 - BACOVA_03817 0.56 -1.3 164,039 - BACOVA_03817 0.56 -1.0 164,039 - BACOVA_03817 0.56 +0.6 164,045 - BACOVA_03817 0.57 -0.3 164,045 - BACOVA_03817 0.57 -0.4 164,119 + BACOVA_03817 0.61 +0.3 164,193 - BACOVA_03817 0.66 +0.4 164,299 - BACOVA_03817 0.73 -1.3 164,327 - BACOVA_03817 0.74 -0.3 164,389 + BACOVA_03817 0.78 -0.7 164,398 + BACOVA_03817 0.79 +1.4 164,454 - BACOVA_03817 0.82 -0.2 164,461 + BACOVA_03817 0.83 -0.5 164,567 + BACOVA_03817 0.89 +0.7 164,568 - BACOVA_03817 0.90 +0.1 164,642 + -1.6 164,720 + +0.4 164,741 - +0.8 164,748 - +0.5 164,752 - -0.4 164,770 + -0.5 164,877 + BACOVA_03818 0.11 +0.4 164,878 - BACOVA_03818 0.11 -0.9 164,878 - BACOVA_03818 0.11 +0.4 164,878 - BACOVA_03818 0.11 -0.6 164,908 - BACOVA_03818 0.14 -2.5 164,910 + BACOVA_03818 0.14 +0.5 164,964 + BACOVA_03818 0.20 -0.3 165,017 - BACOVA_03818 0.26 -1.6 165,017 - BACOVA_03818 0.26 +0.2 165,099 + BACOVA_03818 0.35 +0.3 165,102 + BACOVA_03818 0.35 -0.7 165,102 + BACOVA_03818 0.35 -0.3 165,103 - BACOVA_03818 0.36 -0.7 165,154 - BACOVA_03818 0.41 -0.4 165,154 - BACOVA_03818 0.41 +0.3 165,155 + BACOVA_03818 0.41 -3.0 165,155 + BACOVA_03818 0.41 +0.1 165,156 - BACOVA_03818 0.41 -0.5 165,156 - BACOVA_03818 0.41 -0.4 165,156 - BACOVA_03818 0.41 +1.5 165,159 + BACOVA_03818 0.42 -2.5 165,159 + BACOVA_03818 0.42 -0.3 165,160 - BACOVA_03818 0.42 -0.9 165,160 - BACOVA_03818 0.42 -0.4 165,162 + BACOVA_03818 0.42 +0.2 165,165 + BACOVA_03818 0.42 -0.4 165,202 - BACOVA_03818 0.47 -1.6 165,202 - BACOVA_03818 0.47 -0.7 165,222 - BACOVA_03818 0.49 +0.5 165,246 + BACOVA_03818 0.51 +0.0 165,349 + BACOVA_03818 0.63 +0.3 165,349 + BACOVA_03818 0.63 +0.6 165,358 + BACOVA_03818 0.64 -1.7 165,375 + BACOVA_03818 0.66 -0.3 165,400 - BACOVA_03818 0.68 -0.7 165,409 + BACOVA_03818 0.69 -0.4 165,429 + BACOVA_03818 0.72 -0.0 165,429 + BACOVA_03818 0.72 +1.0 165,429 + BACOVA_03818 0.72 -1.8 165,430 - BACOVA_03818 0.72 +0.4 165,438 + BACOVA_03818 0.73 +0.6 165,446 + BACOVA_03818 0.74 -0.1 165,460 - BACOVA_03818 0.75 -0.1 165,503 - BACOVA_03818 0.80 -0.3 165,514 + BACOVA_03818 0.81 -0.9 165,547 + BACOVA_03818 0.85 -0.0 165,564 - BACOVA_03818 0.87 -1.6 165,586 + BACOVA_03818 0.89 -1.1 165,602 - +0.7 165,619 + -0.2 165,624 + +0.8 165,657 + +0.1 165,689 + +0.2 165,697 + -0.3 165,697 + -1.1 165,698 - -0.5 165,698 - -0.1 165,702 + -1.2 165,711 + +0.1
Or see this region's nucleotide sequence