Experiment: Galactan from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03424 and BACOVA_03425 are separated by 147 nucleotides BACOVA_03425 and BACOVA_03426 are separated by 120 nucleotides
BACOVA_03424: BACOVA_03424 - glycosyl hydrolase, family 43, at 139,546 to 140,877
_03424
BACOVA_03425: BACOVA_03425 - glycosyl hydrolase, family 43, at 141,025 to 142,827
_03425
BACOVA_03426: BACOVA_03426 - TonB-linked outer membrane protein, SusC/RagA family, at 142,948 to 146,100
_03426
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.027 kb on + strand, within BACOVA_03424 at 140.030 kb on - strand, within BACOVA_03424 at 140.030 kb on - strand, within BACOVA_03424 at 140.030 kb on - strand, within BACOVA_03424 at 140.031 kb on + strand, within BACOVA_03424 at 140.035 kb on + strand, within BACOVA_03424 at 140.036 kb on - strand, within BACOVA_03424 at 140.057 kb on - strand, within BACOVA_03424 at 140.057 kb on - strand, within BACOVA_03424 at 140.103 kb on - strand, within BACOVA_03424 at 140.153 kb on - strand, within BACOVA_03424 at 140.153 kb on - strand, within BACOVA_03424 at 140.154 kb on + strand, within BACOVA_03424 at 140.155 kb on - strand, within BACOVA_03424 at 140.190 kb on + strand, within BACOVA_03424 at 140.220 kb on + strand, within BACOVA_03424 at 140.235 kb on + strand, within BACOVA_03424 at 140.260 kb on + strand, within BACOVA_03424 at 140.261 kb on - strand, within BACOVA_03424 at 140.261 kb on - strand, within BACOVA_03424 at 140.261 kb on - strand, within BACOVA_03424 at 140.261 kb on - strand, within BACOVA_03424 at 140.263 kb on - strand, within BACOVA_03424 at 140.308 kb on - strand, within BACOVA_03424 at 140.316 kb on + strand, within BACOVA_03424 at 140.317 kb on - strand, within BACOVA_03424 at 140.329 kb on + strand, within BACOVA_03424 at 140.330 kb on - strand, within BACOVA_03424 at 140.380 kb on - strand, within BACOVA_03424 at 140.380 kb on - strand, within BACOVA_03424 at 140.416 kb on + strand, within BACOVA_03424 at 140.416 kb on + strand, within BACOVA_03424 at 140.417 kb on - strand, within BACOVA_03424 at 140.417 kb on - strand, within BACOVA_03424 at 140.419 kb on - strand, within BACOVA_03424 at 140.419 kb on - strand, within BACOVA_03424 at 140.419 kb on - strand, within BACOVA_03424 at 140.450 kb on - strand, within BACOVA_03424 at 140.553 kb on + strand, within BACOVA_03424 at 140.554 kb on - strand, within BACOVA_03424 at 140.569 kb on + strand, within BACOVA_03424 at 140.569 kb on + strand, within BACOVA_03424 at 140.570 kb on - strand, within BACOVA_03424 at 140.589 kb on + strand, within BACOVA_03424 at 140.596 kb on + strand, within BACOVA_03424 at 140.720 kb on + strand, within BACOVA_03424 at 140.721 kb on - strand, within BACOVA_03424 at 140.733 kb on + strand, within BACOVA_03424 at 140.734 kb on - strand, within BACOVA_03424 at 140.734 kb on - strand, within BACOVA_03424 at 140.734 kb on - strand, within BACOVA_03424 at 140.759 kb on + strand at 140.759 kb on + strand at 140.760 kb on - strand at 140.761 kb on + strand at 140.762 kb on - strand at 140.762 kb on - strand at 140.764 kb on - strand at 140.802 kb on - strand at 140.802 kb on - strand at 140.903 kb on + strand at 140.904 kb on - strand at 141.002 kb on - strand at 141.007 kb on - strand at 141.010 kb on + strand at 141.011 kb on - strand at 141.036 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.110 kb on + strand at 141.113 kb on + strand at 141.113 kb on + strand at 141.120 kb on - strand at 141.147 kb on + strand at 141.147 kb on + strand at 141.148 kb on - strand at 141.168 kb on - strand at 141.174 kb on + strand at 141.175 kb on - strand at 141.233 kb on - strand, within BACOVA_03425 at 141.241 kb on + strand, within BACOVA_03425 at 141.292 kb on + strand, within BACOVA_03425 at 141.298 kb on + strand, within BACOVA_03425 at 141.323 kb on - strand, within BACOVA_03425 at 141.334 kb on - strand, within BACOVA_03425 at 141.361 kb on + strand, within BACOVA_03425 at 141.362 kb on - strand, within BACOVA_03425 at 141.372 kb on - strand, within BACOVA_03425 at 141.378 kb on + strand, within BACOVA_03425 at 141.379 kb on - strand, within BACOVA_03425 at 141.379 kb on - strand, within BACOVA_03425 at 141.379 kb on - strand, within BACOVA_03425 at 141.388 kb on + strand, within BACOVA_03425 at 141.405 kb on + strand, within BACOVA_03425 at 141.405 kb on + strand, within BACOVA_03425 at 141.406 kb on - strand, within BACOVA_03425 at 141.474 kb on - strand, within BACOVA_03425 at 141.529 kb on + strand, within BACOVA_03425 at 141.538 kb on + strand, within BACOVA_03425 at 141.540 kb on + strand, within BACOVA_03425 at 141.550 kb on + strand, within BACOVA_03425 at 141.551 kb on - strand, within BACOVA_03425 at 141.551 kb on - strand, within BACOVA_03425 at 141.553 kb on + strand, within BACOVA_03425 at 141.553 kb on + strand, within BACOVA_03425 at 141.554 kb on - strand, within BACOVA_03425 at 141.555 kb on + strand, within BACOVA_03425 at 141.555 kb on + strand, within BACOVA_03425 at 141.556 kb on - strand, within BACOVA_03425 at 141.561 kb on - strand, within BACOVA_03425 at 141.654 kb on + strand, within BACOVA_03425 at 141.695 kb on - strand, within BACOVA_03425 at 141.696 kb on + strand, within BACOVA_03425 at 141.697 kb on - strand, within BACOVA_03425 at 141.697 kb on - strand, within BACOVA_03425 at 141.727 kb on - strand, within BACOVA_03425 at 141.739 kb on - strand, within BACOVA_03425 at 141.739 kb on - strand, within BACOVA_03425 at 141.751 kb on - strand, within BACOVA_03425 at 141.751 kb on - strand, within BACOVA_03425 at 141.756 kb on - strand, within BACOVA_03425 at 141.762 kb on - strand, within BACOVA_03425 at 141.815 kb on + strand, within BACOVA_03425 at 141.854 kb on + strand, within BACOVA_03425 at 141.870 kb on - strand, within BACOVA_03425 at 141.872 kb on - strand, within BACOVA_03425 at 141.878 kb on + strand, within BACOVA_03425 at 141.879 kb on - strand, within BACOVA_03425 at 141.890 kb on - strand, within BACOVA_03425 at 141.966 kb on + strand, within BACOVA_03425 at 141.967 kb on - strand, within BACOVA_03425 at 142.116 kb on + strand, within BACOVA_03425 at 142.116 kb on + strand, within BACOVA_03425 at 142.116 kb on + strand, within BACOVA_03425 at 142.117 kb on - strand, within BACOVA_03425 at 142.152 kb on + strand, within BACOVA_03425 at 142.153 kb on - strand, within BACOVA_03425 at 142.153 kb on - strand, within BACOVA_03425 at 142.211 kb on + strand, within BACOVA_03425 at 142.218 kb on + strand, within BACOVA_03425 at 142.218 kb on + strand, within BACOVA_03425 at 142.260 kb on + strand, within BACOVA_03425 at 142.265 kb on - strand, within BACOVA_03425 at 142.281 kb on - strand, within BACOVA_03425 at 142.284 kb on - strand, within BACOVA_03425 at 142.304 kb on + strand, within BACOVA_03425 at 142.311 kb on + strand, within BACOVA_03425 at 142.311 kb on + strand, within BACOVA_03425 at 142.328 kb on + strand, within BACOVA_03425 at 142.328 kb on + strand, within BACOVA_03425 at 142.329 kb on - strand, within BACOVA_03425 at 142.329 kb on - strand, within BACOVA_03425 at 142.329 kb on - strand, within BACOVA_03425 at 142.399 kb on - strand, within BACOVA_03425 at 142.477 kb on - strand, within BACOVA_03425 at 142.547 kb on - strand, within BACOVA_03425 at 142.647 kb on + strand at 142.658 kb on + strand at 142.661 kb on - strand at 142.670 kb on + strand at 142.671 kb on - strand at 142.674 kb on - strand at 142.740 kb on + strand at 142.760 kb on - strand at 142.809 kb on - strand at 142.811 kb on - strand at 142.841 kb on + strand at 142.842 kb on - strand at 142.850 kb on + strand at 142.851 kb on - strand at 142.853 kb on + strand at 142.856 kb on + strand at 142.856 kb on + strand at 142.861 kb on - strand at 142.861 kb on - strand at 142.861 kb on - strand at 142.874 kb on - strand at 142.876 kb on - strand at 142.930 kb on - strand at 142.930 kb on - strand at 142.930 kb on - strand at 142.942 kb on - strand at 142.947 kb on - strand at 143.005 kb on - strand at 143.005 kb on - strand at 143.074 kb on - strand at 143.108 kb on + strand at 143.109 kb on - strand at 143.130 kb on + strand at 143.144 kb on + strand at 143.144 kb on + strand at 143.144 kb on + strand at 143.145 kb on - strand at 143.145 kb on - strand at 143.200 kb on + strand at 143.201 kb on - strand at 143.201 kb on - strand at 143.201 kb on - strand at 143.249 kb on + strand at 143.250 kb on - strand at 143.272 kb on - strand, within BACOVA_03426 at 143.295 kb on - strand, within BACOVA_03426 at 143.333 kb on + strand, within BACOVA_03426 at 143.333 kb on + strand, within BACOVA_03426 at 143.334 kb on - strand, within BACOVA_03426 at 143.385 kb on - strand, within BACOVA_03426 at 143.389 kb on - strand, within BACOVA_03426 at 143.389 kb on - strand, within BACOVA_03426 at 143.431 kb on - strand, within BACOVA_03426 at 143.484 kb on + strand, within BACOVA_03426 at 143.485 kb on - strand, within BACOVA_03426 at 143.485 kb on - strand, within BACOVA_03426 at 143.502 kb on + strand, within BACOVA_03426 at 143.503 kb on - strand, within BACOVA_03426 at 143.505 kb on + strand, within BACOVA_03426 at 143.520 kb on - strand, within BACOVA_03426 at 143.555 kb on + strand, within BACOVA_03426 at 143.556 kb on - strand, within BACOVA_03426 at 143.560 kb on - strand, within BACOVA_03426 at 143.577 kb on + strand, within BACOVA_03426 at 143.577 kb on + strand, within BACOVA_03426 at 143.639 kb on + strand, within BACOVA_03426 at 143.639 kb on + strand, within BACOVA_03426 at 143.647 kb on - strand, within BACOVA_03426 at 143.648 kb on + strand, within BACOVA_03426 at 143.649 kb on - strand, within BACOVA_03426 at 143.649 kb on - strand, within BACOVA_03426 at 143.653 kb on - strand, within BACOVA_03426 at 143.679 kb on + strand, within BACOVA_03426 at 143.680 kb on - strand, within BACOVA_03426 at 143.703 kb on - strand, within BACOVA_03426 at 143.726 kb on + strand, within BACOVA_03426 at 143.737 kb on + strand, within BACOVA_03426 at 143.746 kb on + strand, within BACOVA_03426 at 143.747 kb on - strand, within BACOVA_03426 at 143.747 kb on - strand, within BACOVA_03426 at 143.747 kb on - strand, within BACOVA_03426 at 143.769 kb on + strand, within BACOVA_03426 at 143.770 kb on - strand, within BACOVA_03426 at 143.819 kb on - strand, within BACOVA_03426
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C) remove 140,027 + BACOVA_03424 0.36 +0.3 140,030 - BACOVA_03424 0.36 +0.3 140,030 - BACOVA_03424 0.36 +1.2 140,030 - BACOVA_03424 0.36 +0.0 140,031 + BACOVA_03424 0.36 +0.9 140,035 + BACOVA_03424 0.37 +1.6 140,036 - BACOVA_03424 0.37 +0.0 140,057 - BACOVA_03424 0.38 +0.1 140,057 - BACOVA_03424 0.38 +0.7 140,103 - BACOVA_03424 0.42 +0.7 140,153 - BACOVA_03424 0.46 -0.2 140,153 - BACOVA_03424 0.46 +1.2 140,154 + BACOVA_03424 0.46 +0.2 140,155 - BACOVA_03424 0.46 -0.8 140,190 + BACOVA_03424 0.48 +0.5 140,220 + BACOVA_03424 0.51 +0.4 140,235 + BACOVA_03424 0.52 +0.9 140,260 + BACOVA_03424 0.54 +0.7 140,261 - BACOVA_03424 0.54 -0.7 140,261 - BACOVA_03424 0.54 -0.6 140,261 - BACOVA_03424 0.54 +0.4 140,261 - BACOVA_03424 0.54 +0.0 140,263 - BACOVA_03424 0.54 +0.7 140,308 - BACOVA_03424 0.57 +0.4 140,316 + BACOVA_03424 0.58 +0.2 140,317 - BACOVA_03424 0.58 +0.2 140,329 + BACOVA_03424 0.59 -0.2 140,330 - BACOVA_03424 0.59 +0.3 140,380 - BACOVA_03424 0.63 +0.9 140,380 - BACOVA_03424 0.63 +0.2 140,416 + BACOVA_03424 0.65 +0.1 140,416 + BACOVA_03424 0.65 +0.5 140,417 - BACOVA_03424 0.65 -1.7 140,417 - BACOVA_03424 0.65 +0.4 140,419 - BACOVA_03424 0.66 -0.5 140,419 - BACOVA_03424 0.66 -0.2 140,419 - BACOVA_03424 0.66 +0.8 140,450 - BACOVA_03424 0.68 -0.2 140,553 + BACOVA_03424 0.76 -0.3 140,554 - BACOVA_03424 0.76 +2.1 140,569 + BACOVA_03424 0.77 -0.1 140,569 + BACOVA_03424 0.77 +0.9 140,570 - BACOVA_03424 0.77 +0.5 140,589 + BACOVA_03424 0.78 -0.6 140,596 + BACOVA_03424 0.79 -1.2 140,720 + BACOVA_03424 0.88 -1.3 140,721 - BACOVA_03424 0.88 -0.5 140,733 + BACOVA_03424 0.89 -0.1 140,734 - BACOVA_03424 0.89 -0.9 140,734 - BACOVA_03424 0.89 -0.2 140,734 - BACOVA_03424 0.89 -0.9 140,759 + -1.2 140,759 + +0.6 140,760 - +0.4 140,761 + +0.5 140,762 - +0.6 140,762 - +1.4 140,764 - -1.5 140,802 - -0.5 140,802 - -1.4 140,903 + +0.5 140,904 - +0.5 141,002 - +0.0 141,007 - +0.4 141,010 + +1.3 141,011 - -0.4 141,036 + -0.1 141,102 + -2.0 141,102 + -0.1 141,110 + +0.2 141,113 + -0.1 141,113 + +1.3 141,120 - +0.6 141,147 + -0.5 141,147 + +0.9 141,148 - +0.7 141,168 - -1.0 141,174 + +0.1 141,175 - -0.5 141,233 - BACOVA_03425 0.12 -0.9 141,241 + BACOVA_03425 0.12 -0.3 141,292 + BACOVA_03425 0.15 -0.1 141,298 + BACOVA_03425 0.15 -0.1 141,323 - BACOVA_03425 0.17 -0.5 141,334 - BACOVA_03425 0.17 +0.9 141,361 + BACOVA_03425 0.19 +0.3 141,362 - BACOVA_03425 0.19 +0.6 141,372 - BACOVA_03425 0.19 -1.4 141,378 + BACOVA_03425 0.20 +0.6 141,379 - BACOVA_03425 0.20 +0.4 141,379 - BACOVA_03425 0.20 +0.7 141,379 - BACOVA_03425 0.20 -0.5 141,388 + BACOVA_03425 0.20 +0.9 141,405 + BACOVA_03425 0.21 -0.2 141,405 + BACOVA_03425 0.21 +0.5 141,406 - BACOVA_03425 0.21 -0.1 141,474 - BACOVA_03425 0.25 +0.2 141,529 + BACOVA_03425 0.28 +0.5 141,538 + BACOVA_03425 0.28 +0.5 141,540 + BACOVA_03425 0.29 +0.1 141,550 + BACOVA_03425 0.29 -0.2 141,551 - BACOVA_03425 0.29 -0.0 141,551 - BACOVA_03425 0.29 +0.6 141,553 + BACOVA_03425 0.29 +0.1 141,553 + BACOVA_03425 0.29 +0.4 141,554 - BACOVA_03425 0.29 -0.8 141,555 + BACOVA_03425 0.29 +0.5 141,555 + BACOVA_03425 0.29 +0.4 141,556 - BACOVA_03425 0.29 +0.4 141,561 - BACOVA_03425 0.30 -0.6 141,654 + BACOVA_03425 0.35 +0.7 141,695 - BACOVA_03425 0.37 +0.1 141,696 + BACOVA_03425 0.37 +0.9 141,697 - BACOVA_03425 0.37 +0.8 141,697 - BACOVA_03425 0.37 -0.5 141,727 - BACOVA_03425 0.39 +0.3 141,739 - BACOVA_03425 0.40 +1.1 141,739 - BACOVA_03425 0.40 -0.9 141,751 - BACOVA_03425 0.40 +0.7 141,751 - BACOVA_03425 0.40 +0.1 141,756 - BACOVA_03425 0.41 -0.9 141,762 - BACOVA_03425 0.41 +0.3 141,815 + BACOVA_03425 0.44 -0.1 141,854 + BACOVA_03425 0.46 +1.1 141,870 - BACOVA_03425 0.47 +0.2 141,872 - BACOVA_03425 0.47 -0.2 141,878 + BACOVA_03425 0.47 +0.7 141,879 - BACOVA_03425 0.47 +0.0 141,890 - BACOVA_03425 0.48 +0.0 141,966 + BACOVA_03425 0.52 -0.3 141,967 - BACOVA_03425 0.52 -0.0 142,116 + BACOVA_03425 0.61 +0.7 142,116 + BACOVA_03425 0.61 -0.3 142,116 + BACOVA_03425 0.61 +0.3 142,117 - BACOVA_03425 0.61 +0.2 142,152 + BACOVA_03425 0.63 -0.7 142,153 - BACOVA_03425 0.63 +0.6 142,153 - BACOVA_03425 0.63 +0.3 142,211 + BACOVA_03425 0.66 +0.8 142,218 + BACOVA_03425 0.66 +1.1 142,218 + BACOVA_03425 0.66 +0.7 142,260 + BACOVA_03425 0.68 +1.1 142,265 - BACOVA_03425 0.69 +0.5 142,281 - BACOVA_03425 0.70 -0.7 142,284 - BACOVA_03425 0.70 -0.7 142,304 + BACOVA_03425 0.71 +2.1 142,311 + BACOVA_03425 0.71 -1.0 142,311 + BACOVA_03425 0.71 +0.2 142,328 + BACOVA_03425 0.72 +0.1 142,328 + BACOVA_03425 0.72 +0.6 142,329 - BACOVA_03425 0.72 +1.1 142,329 - BACOVA_03425 0.72 +0.3 142,329 - BACOVA_03425 0.72 -1.6 142,399 - BACOVA_03425 0.76 -0.8 142,477 - BACOVA_03425 0.81 -0.5 142,547 - BACOVA_03425 0.84 -1.2 142,647 + +0.4 142,658 + -0.1 142,661 - -0.1 142,670 + -0.0 142,671 - +0.4 142,674 - -2.0 142,740 + -0.1 142,760 - -0.4 142,809 - -0.8 142,811 - +0.5 142,841 + +0.5 142,842 - -1.1 142,850 + +0.0 142,851 - -0.6 142,853 + +0.2 142,856 + -1.1 142,856 + -0.9 142,861 - +0.3 142,861 - +0.5 142,861 - +0.3 142,874 - +0.1 142,876 - -0.1 142,930 - +0.5 142,930 - -0.8 142,930 - -0.3 142,942 - +0.0 142,947 - -0.1 143,005 - -0.9 143,005 - +0.3 143,074 - +0.3 143,108 + -0.3 143,109 - -0.5 143,130 + -0.2 143,144 + -0.8 143,144 + -0.5 143,144 + +0.6 143,145 - +0.6 143,145 - -0.8 143,200 + -1.6 143,201 - -0.7 143,201 - +0.2 143,201 - +0.1 143,249 + -1.1 143,250 - +0.7 143,272 - BACOVA_03426 0.10 -2.3 143,295 - BACOVA_03426 0.11 -0.9 143,333 + BACOVA_03426 0.12 +0.1 143,333 + BACOVA_03426 0.12 -0.6 143,334 - BACOVA_03426 0.12 +0.2 143,385 - BACOVA_03426 0.14 +0.6 143,389 - BACOVA_03426 0.14 -0.2 143,389 - BACOVA_03426 0.14 +0.4 143,431 - BACOVA_03426 0.15 +0.3 143,484 + BACOVA_03426 0.17 -1.2 143,485 - BACOVA_03426 0.17 -0.8 143,485 - BACOVA_03426 0.17 -0.3 143,502 + BACOVA_03426 0.18 -0.9 143,503 - BACOVA_03426 0.18 -0.8 143,505 + BACOVA_03426 0.18 +0.5 143,520 - BACOVA_03426 0.18 -0.4 143,555 + BACOVA_03426 0.19 +0.1 143,556 - BACOVA_03426 0.19 +0.1 143,560 - BACOVA_03426 0.19 -0.8 143,577 + BACOVA_03426 0.20 -0.4 143,577 + BACOVA_03426 0.20 +0.3 143,639 + BACOVA_03426 0.22 +0.7 143,639 + BACOVA_03426 0.22 +0.9 143,647 - BACOVA_03426 0.22 +0.6 143,648 + BACOVA_03426 0.22 -1.1 143,649 - BACOVA_03426 0.22 +0.7 143,649 - BACOVA_03426 0.22 +0.2 143,653 - BACOVA_03426 0.22 +0.0 143,679 + BACOVA_03426 0.23 -0.9 143,680 - BACOVA_03426 0.23 -1.9 143,703 - BACOVA_03426 0.24 +0.5 143,726 + BACOVA_03426 0.25 +0.5 143,737 + BACOVA_03426 0.25 +0.1 143,746 + BACOVA_03426 0.25 +0.4 143,747 - BACOVA_03426 0.25 +0.8 143,747 - BACOVA_03426 0.25 +0.3 143,747 - BACOVA_03426 0.25 +0.9 143,769 + BACOVA_03426 0.26 -1.2 143,770 - BACOVA_03426 0.26 +1.1 143,819 - BACOVA_03426 0.28 -0.2
Or see this region's nucleotide sequence