Experiment: Galactan from Potato 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03177 and BACOVA_03178 are separated by 670 nucleotides BACOVA_03178 and BACOVA_03179 are separated by 331 nucleotides
BACOVA_03177: BACOVA_03177 - putative oxygen-independent coproporphyrinogen III oxidase, at 264,270 to 265,277
_03177
BACOVA_03178: BACOVA_03178 - translation elongation factor G, at 265,948 to 268,104
_03178
BACOVA_03179: BACOVA_03179 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 268,436 to 269,992
_03179
Position (kb) 265
266
267
268
269 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 264.992 kb on + strand, within BACOVA_03177 at 265.017 kb on + strand, within BACOVA_03177 at 265.159 kb on + strand, within BACOVA_03177 at 265.160 kb on - strand, within BACOVA_03177 at 265.176 kb on - strand, within BACOVA_03177 at 265.182 kb on + strand at 265.246 kb on - strand at 265.246 kb on - strand at 265.246 kb on - strand at 265.271 kb on + strand at 265.303 kb on - strand at 265.306 kb on + strand at 265.352 kb on - strand at 265.387 kb on + strand at 265.387 kb on + strand at 265.387 kb on + strand at 265.388 kb on - strand at 265.391 kb on + strand at 265.400 kb on + strand at 265.400 kb on + strand at 265.401 kb on - strand at 265.401 kb on - strand at 265.404 kb on + strand at 265.404 kb on + strand at 265.404 kb on + strand at 265.405 kb on - strand at 265.405 kb on - strand at 265.434 kb on - strand at 265.439 kb on + strand at 265.439 kb on + strand at 265.442 kb on + strand at 265.445 kb on + strand at 265.446 kb on - strand at 265.449 kb on + strand at 265.449 kb on + strand at 265.450 kb on - strand at 265.476 kb on + strand at 265.480 kb on + strand at 265.480 kb on + strand at 265.481 kb on - strand at 265.482 kb on + strand at 265.491 kb on - strand at 265.497 kb on - strand at 265.506 kb on - strand at 265.509 kb on + strand at 265.525 kb on - strand at 265.556 kb on + strand at 265.613 kb on + strand at 265.613 kb on + strand at 265.635 kb on + strand at 265.636 kb on - strand at 265.645 kb on + strand at 265.693 kb on + strand at 265.693 kb on + strand at 265.694 kb on - strand at 265.698 kb on + strand at 265.699 kb on - strand at 265.722 kb on - strand at 265.750 kb on + strand at 265.758 kb on + strand at 265.765 kb on + strand at 265.812 kb on - strand at 265.812 kb on - strand at 265.826 kb on + strand at 265.850 kb on + strand at 265.880 kb on - strand at 265.905 kb on + strand at 265.919 kb on - strand at 265.919 kb on - strand at 265.925 kb on + strand at 265.926 kb on - strand at 265.929 kb on + strand at 265.940 kb on + strand at 265.943 kb on - strand at 265.944 kb on + strand at 265.944 kb on + strand at 265.944 kb on + strand at 265.945 kb on - strand at 265.947 kb on + strand at 265.948 kb on - strand at 265.948 kb on - strand at 265.948 kb on - strand at 265.956 kb on - strand at 265.956 kb on - strand at 266.052 kb on + strand at 266.054 kb on + strand at 266.092 kb on - strand at 266.120 kb on - strand at 266.120 kb on - strand at 266.120 kb on - strand at 266.125 kb on + strand at 266.125 kb on + strand at 266.126 kb on - strand at 266.126 kb on - strand at 266.153 kb on + strand at 266.154 kb on - strand at 266.154 kb on - strand at 266.178 kb on + strand, within BACOVA_03178 at 266.179 kb on - strand, within BACOVA_03178 at 266.231 kb on + strand, within BACOVA_03178 at 266.253 kb on + strand, within BACOVA_03178 at 266.253 kb on + strand, within BACOVA_03178 at 266.272 kb on + strand, within BACOVA_03178 at 266.273 kb on - strand, within BACOVA_03178 at 266.358 kb on + strand, within BACOVA_03178 at 266.379 kb on + strand, within BACOVA_03178 at 266.380 kb on - strand, within BACOVA_03178 at 266.380 kb on - strand, within BACOVA_03178 at 266.380 kb on - strand, within BACOVA_03178 at 266.383 kb on - strand, within BACOVA_03178 at 266.383 kb on - strand, within BACOVA_03178 at 266.478 kb on - strand, within BACOVA_03178 at 266.495 kb on + strand, within BACOVA_03178 at 266.495 kb on - strand, within BACOVA_03178 at 266.586 kb on - strand, within BACOVA_03178 at 266.677 kb on - strand, within BACOVA_03178 at 266.697 kb on + strand, within BACOVA_03178 at 266.697 kb on + strand, within BACOVA_03178 at 266.698 kb on - strand, within BACOVA_03178 at 266.698 kb on - strand, within BACOVA_03178 at 266.708 kb on + strand, within BACOVA_03178 at 266.783 kb on + strand, within BACOVA_03178 at 266.802 kb on - strand, within BACOVA_03178 at 266.808 kb on + strand, within BACOVA_03178 at 266.808 kb on + strand, within BACOVA_03178 at 266.808 kb on + strand, within BACOVA_03178 at 266.817 kb on + strand, within BACOVA_03178 at 266.902 kb on + strand, within BACOVA_03178 at 266.913 kb on - strand, within BACOVA_03178 at 266.913 kb on - strand, within BACOVA_03178 at 266.976 kb on + strand, within BACOVA_03178 at 266.976 kb on + strand, within BACOVA_03178 at 266.977 kb on - strand, within BACOVA_03178 at 266.990 kb on - strand, within BACOVA_03178 at 267.082 kb on - strand, within BACOVA_03178 at 267.084 kb on + strand, within BACOVA_03178 at 267.085 kb on - strand, within BACOVA_03178 at 267.110 kb on - strand, within BACOVA_03178 at 267.142 kb on - strand, within BACOVA_03178 at 267.145 kb on + strand, within BACOVA_03178 at 267.145 kb on - strand, within BACOVA_03178 at 267.146 kb on - strand, within BACOVA_03178 at 267.146 kb on - strand, within BACOVA_03178 at 267.146 kb on - strand, within BACOVA_03178 at 267.147 kb on + strand, within BACOVA_03178 at 267.211 kb on - strand, within BACOVA_03178 at 267.211 kb on - strand, within BACOVA_03178 at 267.347 kb on - strand, within BACOVA_03178 at 267.462 kb on - strand, within BACOVA_03178 at 267.462 kb on - strand, within BACOVA_03178 at 267.470 kb on - strand, within BACOVA_03178 at 267.471 kb on + strand, within BACOVA_03178 at 267.472 kb on - strand, within BACOVA_03178 at 267.472 kb on - strand, within BACOVA_03178 at 267.480 kb on + strand, within BACOVA_03178 at 267.501 kb on + strand, within BACOVA_03178 at 267.502 kb on - strand, within BACOVA_03178 at 267.522 kb on + strand, within BACOVA_03178 at 267.540 kb on + strand, within BACOVA_03178 at 267.540 kb on + strand, within BACOVA_03178 at 267.551 kb on + strand, within BACOVA_03178 at 267.551 kb on + strand, within BACOVA_03178 at 267.570 kb on + strand, within BACOVA_03178 at 267.571 kb on - strand, within BACOVA_03178 at 267.591 kb on + strand, within BACOVA_03178 at 267.630 kb on + strand, within BACOVA_03178 at 267.633 kb on + strand, within BACOVA_03178 at 267.634 kb on - strand, within BACOVA_03178 at 267.634 kb on - strand, within BACOVA_03178 at 267.643 kb on - strand, within BACOVA_03178 at 267.643 kb on - strand, within BACOVA_03178 at 267.643 kb on - strand, within BACOVA_03178 at 267.645 kb on + strand, within BACOVA_03178 at 267.645 kb on + strand, within BACOVA_03178 at 267.646 kb on - strand, within BACOVA_03178 at 267.654 kb on + strand, within BACOVA_03178 at 267.682 kb on + strand, within BACOVA_03178 at 267.683 kb on - strand, within BACOVA_03178 at 267.753 kb on + strand, within BACOVA_03178 at 267.753 kb on + strand, within BACOVA_03178 at 267.823 kb on + strand, within BACOVA_03178 at 267.830 kb on + strand, within BACOVA_03178 at 267.831 kb on - strand, within BACOVA_03178 at 267.853 kb on - strand, within BACOVA_03178 at 267.853 kb on - strand, within BACOVA_03178 at 267.913 kb on - strand at 267.970 kb on + strand at 267.976 kb on - strand at 267.984 kb on + strand at 267.985 kb on - strand at 268.034 kb on - strand at 268.067 kb on + strand at 268.068 kb on - strand at 268.068 kb on - strand at 268.116 kb on - strand at 268.135 kb on - strand at 268.143 kb on + strand at 268.143 kb on + strand at 268.144 kb on - strand at 268.154 kb on - strand at 268.174 kb on - strand at 268.175 kb on + strand at 268.186 kb on - strand at 268.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C) remove 264,992 + BACOVA_03177 0.72 -2.1 265,017 + BACOVA_03177 0.74 -1.3 265,159 + BACOVA_03177 0.88 -0.2 265,160 - BACOVA_03177 0.88 -0.7 265,176 - BACOVA_03177 0.90 -0.8 265,182 + +0.2 265,246 - -1.0 265,246 - +0.3 265,246 - +1.0 265,271 + -0.8 265,303 - +0.1 265,306 + -1.1 265,352 - -0.9 265,387 + -0.2 265,387 + +0.6 265,387 + +0.6 265,388 - -1.2 265,391 + -0.5 265,400 + +0.9 265,400 + -0.1 265,401 - -1.7 265,401 - -0.2 265,404 + -0.9 265,404 + -1.9 265,404 + +0.0 265,405 - -1.9 265,405 - -0.7 265,434 - -0.0 265,439 + -0.6 265,439 + +0.2 265,442 + -1.1 265,445 + -0.4 265,446 - -0.5 265,449 + +0.0 265,449 + -1.1 265,450 - -0.6 265,476 + +0.8 265,480 + +0.8 265,480 + +1.0 265,481 - -1.1 265,482 + -0.1 265,491 - -0.5 265,497 - -2.5 265,506 - -2.1 265,509 + -1.0 265,525 - -2.5 265,556 + -0.8 265,613 + +0.2 265,613 + -0.8 265,635 + +0.3 265,636 - -1.8 265,645 + +0.2 265,693 + +0.2 265,693 + -0.4 265,694 - -1.3 265,698 + -2.0 265,699 - -1.1 265,722 - -0.5 265,750 + +0.4 265,758 + -0.3 265,765 + -1.1 265,812 - -1.1 265,812 - +1.4 265,826 + -0.5 265,850 + +0.6 265,880 - -3.4 265,905 + -0.1 265,919 - -2.1 265,919 - -1.8 265,925 + -0.9 265,926 - -1.3 265,929 + -0.4 265,940 + -1.5 265,943 - -3.8 265,944 + +0.0 265,944 + -1.5 265,944 + -1.0 265,945 - -1.6 265,947 + -0.0 265,948 - -1.6 265,948 - +0.0 265,948 - -2.4 265,956 - -0.8 265,956 - +0.0 266,052 + -0.1 266,054 + +0.0 266,092 - -0.4 266,120 - -1.7 266,120 - -0.7 266,120 - +0.2 266,125 + -1.2 266,125 + -0.9 266,126 - -2.8 266,126 - -1.6 266,153 + -1.0 266,154 - -1.0 266,154 - -2.1 266,178 + BACOVA_03178 0.11 -1.2 266,179 - BACOVA_03178 0.11 -0.7 266,231 + BACOVA_03178 0.13 +0.1 266,253 + BACOVA_03178 0.14 -1.2 266,253 + BACOVA_03178 0.14 -2.5 266,272 + BACOVA_03178 0.15 -0.9 266,273 - BACOVA_03178 0.15 -2.2 266,358 + BACOVA_03178 0.19 -2.0 266,379 + BACOVA_03178 0.20 -2.2 266,380 - BACOVA_03178 0.20 -2.0 266,380 - BACOVA_03178 0.20 -1.8 266,380 - BACOVA_03178 0.20 -0.8 266,383 - BACOVA_03178 0.20 -0.6 266,383 - BACOVA_03178 0.20 -2.0 266,478 - BACOVA_03178 0.25 -2.1 266,495 + BACOVA_03178 0.25 -1.5 266,495 - BACOVA_03178 0.25 -1.9 266,586 - BACOVA_03178 0.30 -0.2 266,677 - BACOVA_03178 0.34 +0.8 266,697 + BACOVA_03178 0.35 -0.8 266,697 + BACOVA_03178 0.35 -0.9 266,698 - BACOVA_03178 0.35 -2.2 266,698 - BACOVA_03178 0.35 -0.2 266,708 + BACOVA_03178 0.35 -1.0 266,783 + BACOVA_03178 0.39 -1.3 266,802 - BACOVA_03178 0.40 -0.9 266,808 + BACOVA_03178 0.40 -0.6 266,808 + BACOVA_03178 0.40 -0.3 266,808 + BACOVA_03178 0.40 -2.9 266,817 + BACOVA_03178 0.40 -1.2 266,902 + BACOVA_03178 0.44 -2.5 266,913 - BACOVA_03178 0.45 -0.8 266,913 - BACOVA_03178 0.45 -0.7 266,976 + BACOVA_03178 0.48 -0.5 266,976 + BACOVA_03178 0.48 -2.0 266,977 - BACOVA_03178 0.48 -0.5 266,990 - BACOVA_03178 0.48 -0.9 267,082 - BACOVA_03178 0.53 -1.8 267,084 + BACOVA_03178 0.53 -0.6 267,085 - BACOVA_03178 0.53 -2.5 267,110 - BACOVA_03178 0.54 -0.9 267,142 - BACOVA_03178 0.55 -0.7 267,145 + BACOVA_03178 0.55 -1.2 267,145 - BACOVA_03178 0.55 -1.3 267,146 - BACOVA_03178 0.56 -1.4 267,146 - BACOVA_03178 0.56 -0.8 267,146 - BACOVA_03178 0.56 -1.6 267,147 + BACOVA_03178 0.56 -2.7 267,211 - BACOVA_03178 0.59 -0.6 267,211 - BACOVA_03178 0.59 -0.8 267,347 - BACOVA_03178 0.65 -0.5 267,462 - BACOVA_03178 0.70 -1.8 267,462 - BACOVA_03178 0.70 -0.1 267,470 - BACOVA_03178 0.71 -2.0 267,471 + BACOVA_03178 0.71 -1.3 267,472 - BACOVA_03178 0.71 -0.7 267,472 - BACOVA_03178 0.71 -2.1 267,480 + BACOVA_03178 0.71 -0.8 267,501 + BACOVA_03178 0.72 -1.5 267,502 - BACOVA_03178 0.72 -1.4 267,522 + BACOVA_03178 0.73 -0.9 267,540 + BACOVA_03178 0.74 -0.9 267,540 + BACOVA_03178 0.74 -0.4 267,551 + BACOVA_03178 0.74 -0.8 267,551 + BACOVA_03178 0.74 -0.1 267,570 + BACOVA_03178 0.75 -2.9 267,571 - BACOVA_03178 0.75 -1.7 267,591 + BACOVA_03178 0.76 -0.3 267,630 + BACOVA_03178 0.78 -1.5 267,633 + BACOVA_03178 0.78 -3.2 267,634 - BACOVA_03178 0.78 +0.3 267,634 - BACOVA_03178 0.78 -0.8 267,643 - BACOVA_03178 0.79 -1.8 267,643 - BACOVA_03178 0.79 -2.6 267,643 - BACOVA_03178 0.79 -0.2 267,645 + BACOVA_03178 0.79 -0.2 267,645 + BACOVA_03178 0.79 +0.2 267,646 - BACOVA_03178 0.79 -1.1 267,654 + BACOVA_03178 0.79 -1.2 267,682 + BACOVA_03178 0.80 -0.4 267,683 - BACOVA_03178 0.80 -1.0 267,753 + BACOVA_03178 0.84 -1.2 267,753 + BACOVA_03178 0.84 -1.4 267,823 + BACOVA_03178 0.87 -2.2 267,830 + BACOVA_03178 0.87 -1.6 267,831 - BACOVA_03178 0.87 -2.2 267,853 - BACOVA_03178 0.88 -0.2 267,853 - BACOVA_03178 0.88 -1.8 267,913 - -0.6 267,970 + -1.0 267,976 - -1.4 267,984 + +0.0 267,985 - -2.7 268,034 - -1.6 268,067 + -0.3 268,068 - -0.5 268,068 - -1.2 268,116 - +0.0 268,135 - -0.6 268,143 + -0.2 268,143 + -0.8 268,144 - +0.0 268,154 - -0.4 268,174 - -0.1 268,175 + +0.6 268,186 - -0.1 268,347 + -0.7
Or see this region's nucleotide sequence