Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01493

Experiment: Galactan from Potato 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01491 and BACOVA_01492 are separated by 66 nucleotidesBACOVA_01492 and BACOVA_01493 are separated by 19 nucleotidesBACOVA_01493 and BACOVA_01494 are separated by 93 nucleotides BACOVA_01491: BACOVA_01491 - hypothetical protein, at 2,371 to 4,752 _01491 BACOVA_01492: BACOVA_01492 - hypothetical protein, at 4,819 to 5,232 _01492 BACOVA_01493: BACOVA_01493 - glycosyl hydrolase family 2, sugar binding domain protein, at 5,252 to 5,956 _01493 BACOVA_01494: BACOVA_01494 - F5/8 type C domain protein, at 6,050 to 8,155 _01494 Position (kb) 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1at 4.279 kb on - strand, within BACOVA_01491at 4.284 kb on + strand, within BACOVA_01491at 4.284 kb on + strand, within BACOVA_01491at 4.284 kb on + strand, within BACOVA_01491at 4.328 kb on + strand, within BACOVA_01491at 4.328 kb on + strand, within BACOVA_01491at 4.329 kb on - strand, within BACOVA_01491at 4.329 kb on - strand, within BACOVA_01491at 4.329 kb on - strand, within BACOVA_01491at 4.348 kb on - strand, within BACOVA_01491at 4.348 kb on - strand, within BACOVA_01491at 4.349 kb on + strand, within BACOVA_01491at 4.349 kb on + strand, within BACOVA_01491at 4.349 kb on + strand, within BACOVA_01491at 4.434 kb on + strand, within BACOVA_01491at 4.474 kb on - strand, within BACOVA_01491at 4.570 kb on - strandat 4.570 kb on - strandat 4.644 kb on - strandat 4.650 kb on + strandat 4.699 kb on - strandat 4.723 kb on - strandat 4.739 kb on - strandat 4.739 kb on - strandat 4.740 kb on + strandat 4.741 kb on - strandat 4.763 kb on - strandat 4.774 kb on + strandat 4.778 kb on + strandat 4.820 kb on + strandat 4.831 kb on + strandat 4.831 kb on + strandat 4.834 kb on + strandat 4.927 kb on + strand, within BACOVA_01492at 4.933 kb on - strand, within BACOVA_01492at 4.956 kb on + strand, within BACOVA_01492at 4.956 kb on + strand, within BACOVA_01492at 4.957 kb on - strand, within BACOVA_01492at 5.020 kb on + strand, within BACOVA_01492at 5.020 kb on + strand, within BACOVA_01492at 5.020 kb on + strand, within BACOVA_01492at 5.024 kb on + strand, within BACOVA_01492at 5.024 kb on + strand, within BACOVA_01492at 5.024 kb on + strand, within BACOVA_01492at 5.025 kb on - strand, within BACOVA_01492at 5.025 kb on - strand, within BACOVA_01492at 5.025 kb on - strand, within BACOVA_01492at 5.026 kb on + strand, within BACOVA_01492at 5.110 kb on + strand, within BACOVA_01492at 5.116 kb on - strand, within BACOVA_01492at 5.124 kb on + strand, within BACOVA_01492at 5.166 kb on + strand, within BACOVA_01492at 5.180 kb on - strand, within BACOVA_01492at 5.200 kb on + strandat 5.200 kb on + strandat 5.260 kb on + strandat 5.261 kb on - strandat 5.261 kb on - strandat 5.262 kb on + strandat 5.297 kb on + strandat 5.297 kb on + strandat 5.298 kb on - strandat 5.301 kb on + strandat 5.301 kb on + strandat 5.359 kb on + strand, within BACOVA_01493at 5.364 kb on - strand, within BACOVA_01493at 5.368 kb on + strand, within BACOVA_01493at 5.369 kb on - strand, within BACOVA_01493at 5.370 kb on + strand, within BACOVA_01493at 5.370 kb on + strand, within BACOVA_01493at 5.370 kb on + strand, within BACOVA_01493at 5.371 kb on - strand, within BACOVA_01493at 5.428 kb on + strand, within BACOVA_01493at 5.441 kb on + strand, within BACOVA_01493at 5.441 kb on + strand, within BACOVA_01493at 5.470 kb on + strand, within BACOVA_01493at 5.470 kb on + strand, within BACOVA_01493at 5.471 kb on - strand, within BACOVA_01493at 5.495 kb on - strand, within BACOVA_01493at 5.495 kb on - strand, within BACOVA_01493at 5.525 kb on - strand, within BACOVA_01493at 5.549 kb on - strand, within BACOVA_01493at 5.552 kb on + strand, within BACOVA_01493at 5.553 kb on - strand, within BACOVA_01493at 5.554 kb on + strand, within BACOVA_01493at 5.572 kb on - strand, within BACOVA_01493at 5.581 kb on + strand, within BACOVA_01493at 5.586 kb on - strand, within BACOVA_01493at 5.586 kb on - strand, within BACOVA_01493at 5.651 kb on + strand, within BACOVA_01493at 5.651 kb on + strand, within BACOVA_01493at 5.675 kb on - strand, within BACOVA_01493at 5.675 kb on - strand, within BACOVA_01493at 5.734 kb on + strand, within BACOVA_01493at 5.734 kb on + strand, within BACOVA_01493at 5.792 kb on - strand, within BACOVA_01493at 5.802 kb on - strand, within BACOVA_01493at 5.802 kb on - strand, within BACOVA_01493at 5.885 kb on + strand, within BACOVA_01493at 5.902 kb on - strandat 5.905 kb on + strandat 5.905 kb on + strandat 5.906 kb on - strandat 5.926 kb on + strandat 5.927 kb on - strandat 5.927 kb on - strandat 5.930 kb on + strandat 5.939 kb on + strandat 5.942 kb on + strandat 5.997 kb on + strandat 6.004 kb on + strandat 6.005 kb on - strandat 6.019 kb on - strandat 6.022 kb on - strandat 6.024 kb on + strandat 6.024 kb on + strandat 6.038 kb on + strandat 6.039 kb on - strandat 6.042 kb on + strandat 6.042 kb on + strandat 6.042 kb on + strandat 6.053 kb on + strandat 6.054 kb on - strandat 6.065 kb on - strandat 6.089 kb on - strandat 6.089 kb on - strandat 6.124 kb on + strandat 6.128 kb on - strandat 6.129 kb on + strandat 6.130 kb on - strandat 6.148 kb on + strandat 6.149 kb on - strandat 6.149 kb on - strandat 6.188 kb on - strandat 6.203 kb on - strandat 6.224 kb on - strandat 6.226 kb on + strandat 6.226 kb on + strandat 6.259 kb on + strandat 6.319 kb on - strand, within BACOVA_01494at 6.338 kb on - strand, within BACOVA_01494at 6.379 kb on + strand, within BACOVA_01494at 6.380 kb on - strand, within BACOVA_01494at 6.399 kb on + strand, within BACOVA_01494at 6.400 kb on + strand, within BACOVA_01494at 6.423 kb on - strand, within BACOVA_01494at 6.423 kb on - strand, within BACOVA_01494at 6.425 kb on - strand, within BACOVA_01494at 6.431 kb on + strand, within BACOVA_01494at 6.432 kb on - strand, within BACOVA_01494at 6.432 kb on - strand, within BACOVA_01494at 6.432 kb on - strand, within BACOVA_01494at 6.491 kb on - strand, within BACOVA_01494at 6.503 kb on + strand, within BACOVA_01494at 6.511 kb on + strand, within BACOVA_01494at 6.511 kb on + strand, within BACOVA_01494at 6.556 kb on - strand, within BACOVA_01494at 6.575 kb on - strand, within BACOVA_01494at 6.590 kb on + strand, within BACOVA_01494at 6.591 kb on - strand, within BACOVA_01494at 6.591 kb on - strand, within BACOVA_01494at 6.591 kb on - strand, within BACOVA_01494at 6.595 kb on + strand, within BACOVA_01494at 6.595 kb on + strand, within BACOVA_01494at 6.600 kb on + strand, within BACOVA_01494at 6.631 kb on + strand, within BACOVA_01494at 6.631 kb on + strand, within BACOVA_01494at 6.631 kb on + strand, within BACOVA_01494at 6.632 kb on - strand, within BACOVA_01494at 6.636 kb on - strand, within BACOVA_01494at 6.673 kb on + strand, within BACOVA_01494at 6.677 kb on + strand, within BACOVA_01494at 6.693 kb on + strand, within BACOVA_01494at 6.693 kb on + strand, within BACOVA_01494at 6.704 kb on - strand, within BACOVA_01494at 6.713 kb on - strand, within BACOVA_01494at 6.779 kb on + strand, within BACOVA_01494at 6.784 kb on + strand, within BACOVA_01494at 6.850 kb on + strand, within BACOVA_01494at 6.853 kb on + strand, within BACOVA_01494at 6.854 kb on - strand, within BACOVA_01494at 6.884 kb on - strand, within BACOVA_01494at 6.885 kb on + strand, within BACOVA_01494at 6.886 kb on - strand, within BACOVA_01494at 6.886 kb on - strand, within BACOVA_01494at 6.886 kb on - strand, within BACOVA_01494at 6.916 kb on + strand, within BACOVA_01494at 6.956 kb on - strand, within BACOVA_01494

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Per-strain Table

Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/mL (C)
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4,279 - BACOVA_01491 0.80 -1.1
4,284 + BACOVA_01491 0.80 +0.8
4,284 + BACOVA_01491 0.80 -0.4
4,284 + BACOVA_01491 0.80 -0.0
4,328 + BACOVA_01491 0.82 -0.8
4,328 + BACOVA_01491 0.82 +0.2
4,329 - BACOVA_01491 0.82 +0.6
4,329 - BACOVA_01491 0.82 -0.1
4,329 - BACOVA_01491 0.82 -0.7
4,348 - BACOVA_01491 0.83 -1.5
4,348 - BACOVA_01491 0.83 +0.3
4,349 + BACOVA_01491 0.83 +0.2
4,349 + BACOVA_01491 0.83 -0.4
4,349 + BACOVA_01491 0.83 -0.7
4,434 + BACOVA_01491 0.87 +1.2
4,474 - BACOVA_01491 0.88 -0.2
4,570 - -0.6
4,570 - +0.0
4,644 - -1.2
4,650 + +1.0
4,699 - +0.1
4,723 - +0.4
4,739 - +0.3
4,739 - -0.9
4,740 + -0.5
4,741 - -1.7
4,763 - -3.5
4,774 + +0.1
4,778 + +1.4
4,820 + -1.7
4,831 + -1.3
4,831 + +0.5
4,834 + -0.2
4,927 + BACOVA_01492 0.26 -2.8
4,933 - BACOVA_01492 0.28 -1.2
4,956 + BACOVA_01492 0.33 -0.5
4,956 + BACOVA_01492 0.33 +0.2
4,957 - BACOVA_01492 0.33 -1.2
5,020 + BACOVA_01492 0.49 +0.6
5,020 + BACOVA_01492 0.49 -0.0
5,020 + BACOVA_01492 0.49 +0.2
5,024 + BACOVA_01492 0.50 -1.9
5,024 + BACOVA_01492 0.50 -0.5
5,024 + BACOVA_01492 0.50 +0.7
5,025 - BACOVA_01492 0.50 -0.2
5,025 - BACOVA_01492 0.50 -0.5
5,025 - BACOVA_01492 0.50 -0.5
5,026 + BACOVA_01492 0.50 +0.1
5,110 + BACOVA_01492 0.70 +0.4
5,116 - BACOVA_01492 0.72 -0.6
5,124 + BACOVA_01492 0.74 +0.4
5,166 + BACOVA_01492 0.84 -0.8
5,180 - BACOVA_01492 0.87 -0.7
5,200 + +0.1
5,200 + +0.3
5,260 + -0.1
5,261 - -1.9
5,261 - +0.6
5,262 + -2.2
5,297 + -1.7
5,297 + -1.3
5,298 - -2.2
5,301 + -0.2
5,301 + -0.6
5,359 + BACOVA_01493 0.15 -0.5
5,364 - BACOVA_01493 0.16 -1.5
5,368 + BACOVA_01493 0.16 +0.0
5,369 - BACOVA_01493 0.17 -2.5
5,370 + BACOVA_01493 0.17 -0.4
5,370 + BACOVA_01493 0.17 +0.5
5,370 + BACOVA_01493 0.17 -0.7
5,371 - BACOVA_01493 0.17 -0.3
5,428 + BACOVA_01493 0.25 -0.6
5,441 + BACOVA_01493 0.27 -1.2
5,441 + BACOVA_01493 0.27 +0.5
5,470 + BACOVA_01493 0.31 +0.4
5,470 + BACOVA_01493 0.31 +0.1
5,471 - BACOVA_01493 0.31 -1.2
5,495 - BACOVA_01493 0.34 -1.7
5,495 - BACOVA_01493 0.34 -0.2
5,525 - BACOVA_01493 0.39 +0.2
5,549 - BACOVA_01493 0.42 +0.0
5,552 + BACOVA_01493 0.43 -0.2
5,553 - BACOVA_01493 0.43 -0.1
5,554 + BACOVA_01493 0.43 +0.2
5,572 - BACOVA_01493 0.45 -2.0
5,581 + BACOVA_01493 0.47 -0.8
5,586 - BACOVA_01493 0.47 -0.1
5,586 - BACOVA_01493 0.47 +0.0
5,651 + BACOVA_01493 0.57 +0.0
5,651 + BACOVA_01493 0.57 -0.9
5,675 - BACOVA_01493 0.60 +0.6
5,675 - BACOVA_01493 0.60 -0.3
5,734 + BACOVA_01493 0.68 -0.6
5,734 + BACOVA_01493 0.68 +0.2
5,792 - BACOVA_01493 0.77 +0.4
5,802 - BACOVA_01493 0.78 -0.2
5,802 - BACOVA_01493 0.78 -2.6
5,885 + BACOVA_01493 0.90 -0.2
5,902 - -2.5
5,905 + +0.9
5,905 + -1.7
5,906 - +1.2
5,926 + -0.6
5,927 - -0.5
5,927 - -1.1
5,930 + -0.5
5,939 + -0.8
5,942 + +0.3
5,997 + -1.0
6,004 + +0.6
6,005 - -1.6
6,019 - -0.9
6,022 - +0.4
6,024 + -0.6
6,024 + +0.7
6,038 + -0.3
6,039 - -0.7
6,042 + -2.0
6,042 + -0.8
6,042 + -0.3
6,053 + +0.5
6,054 - -0.5
6,065 - -0.3
6,089 - -0.7
6,089 - -1.2
6,124 + +0.1
6,128 - +0.0
6,129 + +0.4
6,130 - -0.1
6,148 + -0.8
6,149 - -0.9
6,149 - -0.8
6,188 - -0.1
6,203 - -0.6
6,224 - -0.9
6,226 + -0.4
6,226 + +0.4
6,259 + -0.3
6,319 - BACOVA_01494 0.13 -1.8
6,338 - BACOVA_01494 0.14 -2.6
6,379 + BACOVA_01494 0.16 -0.1
6,380 - BACOVA_01494 0.16 +0.8
6,399 + BACOVA_01494 0.17 +0.5
6,400 + BACOVA_01494 0.17 -0.9
6,423 - BACOVA_01494 0.18 -0.2
6,423 - BACOVA_01494 0.18 -0.5
6,425 - BACOVA_01494 0.18 -0.3
6,431 + BACOVA_01494 0.18 -1.2
6,432 - BACOVA_01494 0.18 -0.2
6,432 - BACOVA_01494 0.18 +0.0
6,432 - BACOVA_01494 0.18 -0.3
6,491 - BACOVA_01494 0.21 +0.3
6,503 + BACOVA_01494 0.22 +1.6
6,511 + BACOVA_01494 0.22 -0.2
6,511 + BACOVA_01494 0.22 +0.7
6,556 - BACOVA_01494 0.24 -0.3
6,575 - BACOVA_01494 0.25 -2.0
6,590 + BACOVA_01494 0.26 -0.2
6,591 - BACOVA_01494 0.26 -0.1
6,591 - BACOVA_01494 0.26 +0.2
6,591 - BACOVA_01494 0.26 +0.1
6,595 + BACOVA_01494 0.26 +0.4
6,595 + BACOVA_01494 0.26 -0.6
6,600 + BACOVA_01494 0.26 -0.5
6,631 + BACOVA_01494 0.28 -1.2
6,631 + BACOVA_01494 0.28 -1.6
6,631 + BACOVA_01494 0.28 +0.1
6,632 - BACOVA_01494 0.28 +0.6
6,636 - BACOVA_01494 0.28 +0.3
6,673 + BACOVA_01494 0.30 -0.3
6,677 + BACOVA_01494 0.30 -1.2
6,693 + BACOVA_01494 0.31 +0.3
6,693 + BACOVA_01494 0.31 -0.8
6,704 - BACOVA_01494 0.31 -0.1
6,713 - BACOVA_01494 0.31 -1.0
6,779 + BACOVA_01494 0.35 -0.5
6,784 + BACOVA_01494 0.35 +1.5
6,850 + BACOVA_01494 0.38 +0.0
6,853 + BACOVA_01494 0.38 +0.8
6,854 - BACOVA_01494 0.38 -1.2
6,884 - BACOVA_01494 0.40 -0.2
6,885 + BACOVA_01494 0.40 -0.7
6,886 - BACOVA_01494 0.40 +0.2
6,886 - BACOVA_01494 0.40 -0.6
6,886 - BACOVA_01494 0.40 -0.4
6,916 + BACOVA_01494 0.41 -0.6
6,956 - BACOVA_01494 0.43 +1.2

Or see this region's nucleotide sequence