Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF840 and GFF841 are separated by 114 nucleotides GFF841 and GFF842 overlap by 8 nucleotides GFF842 and GFF843 overlap by 4 nucleotides
GFF840 - FIG149030: hypothetical protein, at 541,215 to 542,705
GFF840
GFF841 - FIG039767: hypothetical protein, at 542,820 to 543,431
GFF841
GFF842 - FIG007317: Chromosome segregation protein SMC-like, at 543,424 to 546,846
GFF842
GFF843 - FIG005429: hypothetical protein, at 546,843 to 548,054
GFF843
Position (kb) 543
544
545
546
547 Strain fitness (log2 ratio) -1
0
1
2 at 542.529 kb on + strand, within GFF840 at 542.529 kb on + strand, within GFF840 at 542.530 kb on - strand, within GFF840 at 543.004 kb on + strand, within GFF841 at 543.005 kb on - strand, within GFF841 at 543.127 kb on + strand, within GFF841 at 543.128 kb on - strand, within GFF841 at 543.128 kb on - strand, within GFF841 at 543.128 kb on - strand, within GFF841 at 543.292 kb on - strand, within GFF841 at 543.649 kb on + strand at 543.649 kb on + strand at 543.649 kb on + strand at 543.649 kb on + strand at 543.649 kb on + strand at 543.650 kb on - strand at 543.650 kb on - strand at 543.698 kb on - strand at 543.698 kb on - strand at 543.698 kb on - strand at 543.712 kb on + strand at 543.712 kb on + strand at 543.713 kb on - strand at 543.778 kb on + strand, within GFF842 at 543.779 kb on - strand, within GFF842 at 544.006 kb on + strand, within GFF842 at 544.036 kb on - strand, within GFF842 at 544.325 kb on - strand, within GFF842 at 544.595 kb on + strand, within GFF842 at 544.595 kb on + strand, within GFF842 at 544.595 kb on + strand, within GFF842 at 544.785 kb on + strand, within GFF842 at 544.786 kb on - strand, within GFF842 at 544.786 kb on - strand, within GFF842 at 544.966 kb on + strand, within GFF842 at 544.967 kb on - strand, within GFF842 at 545.117 kb on - strand, within GFF842 at 545.637 kb on - strand, within GFF842 at 545.954 kb on - strand, within GFF842 at 546.136 kb on + strand, within GFF842 at 546.136 kb on + strand, within GFF842 at 546.136 kb on + strand, within GFF842 at 546.137 kb on - strand, within GFF842 at 546.137 kb on - strand, within GFF842 at 546.430 kb on + strand, within GFF842 at 546.478 kb on + strand, within GFF842 at 546.479 kb on - strand, within GFF842 at 546.505 kb on + strand at 546.604 kb on + strand at 546.761 kb on - strand at 546.801 kb on - strand at 546.946 kb on + strand at 547.076 kb on - strand, within GFF843 at 547.302 kb on + strand, within GFF843 at 547.302 kb on + strand, within GFF843 at 547.303 kb on - strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.735 kb on - strand, within GFF843 at 547.738 kb on - strand, within GFF843
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 542,529 + GFF840 0.88 +0.1 542,529 + GFF840 0.88 -0.0 542,530 - GFF840 0.88 -0.4 543,004 + GFF841 0.30 +1.0 543,005 - GFF841 0.30 -1.7 543,127 + GFF841 0.50 -0.0 543,128 - GFF841 0.50 -0.0 543,128 - GFF841 0.50 -0.1 543,128 - GFF841 0.50 +0.7 543,292 - GFF841 0.77 -0.8 543,649 + -0.4 543,649 + -0.2 543,649 + -0.9 543,649 + -0.4 543,649 + +0.8 543,650 - +0.7 543,650 - -0.2 543,698 - -0.2 543,698 - -0.3 543,698 - +0.4 543,712 + +0.1 543,712 + -0.0 543,713 - +1.1 543,778 + GFF842 0.10 -0.9 543,779 - GFF842 0.10 -0.1 544,006 + GFF842 0.17 -0.8 544,036 - GFF842 0.18 -0.2 544,325 - GFF842 0.26 +2.3 544,595 + GFF842 0.34 +0.3 544,595 + GFF842 0.34 +0.1 544,595 + GFF842 0.34 -0.7 544,785 + GFF842 0.40 -0.1 544,786 - GFF842 0.40 -0.2 544,786 - GFF842 0.40 -0.1 544,966 + GFF842 0.45 -1.3 544,967 - GFF842 0.45 -0.3 545,117 - GFF842 0.49 -0.3 545,637 - GFF842 0.65 +0.5 545,954 - GFF842 0.74 -0.2 546,136 + GFF842 0.79 -0.7 546,136 + GFF842 0.79 -0.4 546,136 + GFF842 0.79 -0.8 546,137 - GFF842 0.79 -0.9 546,137 - GFF842 0.79 -0.5 546,430 + GFF842 0.88 +0.9 546,478 + GFF842 0.89 +0.3 546,479 - GFF842 0.89 -0.5 546,505 + -0.2 546,604 + +0.0 546,761 - -0.3 546,801 - -0.2 546,946 + +0.0 547,076 - GFF843 0.19 -0.8 547,302 + GFF843 0.38 -0.4 547,302 + GFF843 0.38 -0.3 547,303 - GFF843 0.38 +0.3 547,606 + GFF843 0.63 -0.1 547,606 + GFF843 0.63 +0.0 547,606 + GFF843 0.63 -0.2 547,607 - GFF843 0.63 -0.7 547,607 - GFF843 0.63 +0.5 547,607 - GFF843 0.63 -0.1 547,607 - GFF843 0.63 +0.3 547,735 - GFF843 0.74 -0.3 547,738 - GFF843 0.74 -0.8
Or see this region's nucleotide sequence